Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0374 ATGGAACAGAAAAGCTTTCTGATATCAGCGCTGAGTGTTGGGGTGGGAGTGGGAGTGGGGATTGGATTGGCTTCTGGACAAACCGTTGGCAAATGGGGTGGTTGCAACTTTTCTTCAAACGCTATTACTGCTGACAACATAGAGCAGGAAATGCTCCGGCAAGTTATTGATGGCAGAGAAAGCAACGTCACTTTTGATAAATTCCCTTACTATCTCAGTGAGCGGACAAGGGTTTTGCTGACAAGTGCTGCTTATGTCCATTTAAAGCATGCTGAGGTTTCCAAATATACACGTAATCTTGCTCCTGCAAGCCGAACAATTCTACTCTCAGGGCCTGCAGAACTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTCCTAGATTTAACTGACTTTTCATTGAAGATTCAGAGTAAATATGGTTCTTCTTCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGACTACTTTGGAGCGGCTATCGGACCTATTTGGGTCATTTTCATTCTTTCCACAAAAGGAGGAACCTAAAGGTAAAATGCACAGGCCAAGCAGTGGAATGGACCTACAATCAATGGGGGCTGAATCATCTTGTAATCCTCCAAAGCTCCGAAGGAATGCTGCTTCTTCATCGAATATTAGCGGCCTTGCTTCGCAAAACAATCCTACAAATCCAGCTCCACTGAAGCGCACAAGCAGCTGGTCTTTTGATGAAAAGCTCCTTATACAGTCTCTTTACAAGGTTCTGGCTTTTGTGTCAAAAACCTATCCCATTGTGCTATATCTGCGGGATGCTGATATGTTATTATACAGATCACAAAGGATATATAACATGTTCCAGAAAATGTTAAAGAAACTTTCTGGACACATTCTGATTCTTGGCTCACGAGTTCTTGATTCTGGTAATGACTATGAAGAGGTGGATGAGAAGCTTTCTATGCTCTTCCCATACAACATAGAAATCAGACCCCCAGAAGATGAGTCGCATCTTGTTAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAACTATATTGAAGAGATTATTGTGTCAGCAATTTCTTATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGAAAACTCATTATTTCTTCCAATAGTTTGTCCCATGCATTGGGTATATTCCACAAGGGGAAATTTGGTGGTAAAAAAGAATCAAGTGATACGTCAAAATTGGAAGATCAAGCTGTGAAACCTGAGCAAAAGGAGGAAGGAAATGTTACAAAACCAGCAGAGAAGTCTGAAGGTGCTGCTCCTGCAAAAAATGCTGAAGCAGAAAAGTCAACTTCAGTGGGAAAGGGGGATGGTGAAATTTCAGTTCCAGCTTCCAAAGCTGTTGAAGTTCCTCCTGATAATGAATTTGAGAAGCGAATAAGGAGTGAGGTTATACCAGCAAACGATATTGATGTCACGTTCTCTGATATTGGTGCCTTAGAAGAGACCAAAGAATCCCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGCGGGCTTCTAAAGCCTTGCAGAGGAATATTGCTATTTGGGCCTCCCGGCACGGGGAAGACAATGTTGGCGAAGGCCATTGCAAAGGAGGCTGGAGCTAGTTTCATCAATGTATCAATGTCTACCATCACTTCTAAGTGGTTTGGTGAAGATGAGAAGAATGTCCGCGCTTTGTTTACACTTGCAGGCAAGGTCTCACCAACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAGAGGACCAGAGTAGGGGAGCATGAAGCCATGCGAAAAATCAAGAATGAATTCATGGCTCACTGGGACGGGCTTATGACGAAACCTGGGGAGCGTATCCTTGTCCTTGCTGCAACCAATAGGCCCTTCGACTTGGATGAAGCTATTATTAGGCGTTTTGAAAGGAGAATTATGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACACTAGTGGCAAAGGAAAAGGTGGACCAGGAACTTGATTTCAAGGAACTCGCAATTATGACGGAAGGATATACTGGAAGTGATCTGAAGAATTTATGCACAACTGCTGCTTATCGGCCTGTTAGGGAGTTGATTCAGCAAGAGAGACTAAAGATCCTGGATAGAAAGCAGAAAACTGCCATGGAACAGAATAAAGATGTCCAAGACAGACAAGGAGAAAAATCAATGGTAGGAAGTACCCAAGATGCTCAAGATACAGAAAAGGAAGTTCAACAAGAAAGAGTTATTACCCTCAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCAGAGGGGGCTGGAATGGGTGAGCTGAAGCAGTGGAATGAATTGTATGGAGAAGGCGGTTCGAGGAAGCAACAACAATTGTCCTACTTCCTTTGA 2574 0.4285 MEQKSFLISALSVGVGVGVGIGLASGQTVGKWGGCNFSSNAITADNIEQEMLRQVIDGRESNVTFDKFPYYLSERTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSSNKESSFKRSTSETTLERLSDLFGSFSFFPQKEEPKGKMHRPSSGMDLQSMGAESSCNPPKLRRNAASSSNISGLASQNNPTNPAPLKRTSSWSFDEKLLIQSLYKVLAFVSKTYPIVLYLRDADMLLYRSQRIYNMFQKMLKKLSGHILILGSRVLDSGNDYEEVDEKLSMLFPYNIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHIMEVLAANDLDCDDLDSICVADTMVLSNYIEEIIVSAISYHLMKNKDLEYRNGKLIISSNSLSHALGIFHKGKFGGKKESSDTSKLEDQAVKPEQKEEGNVTKPAEKSEGAAPAKNAEAEKSTSVGKGDGEISVPASKAVEVPPDNEFEKRIRSEVIPANDIDVTFSDIGALEETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAGKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMAHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLVAKEKVDQELDFKELAIMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKILDRKQKTAMEQNKDVQDRQGEKSMVGSTQDAQDTEKEVQQERVITLRPLNMQDFKEAKNQVAASFAAEGAGMGELKQWNELYGEGGSRKQQQLSYFL* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0374 857 MobiDBLite consensus disorder prediction 765 799 - -
Lja4g0374 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 765 IPR027417 -
Lja4g0374 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 368 IPR027417 -
Lja4g0374 857 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 857 - -
Lja4g0374 857 Gene3D - 698 776 - -
Lja4g0374 857 Pfam ATPase family associated with various cellular activities (AAA) 566 696 IPR003959 GO:0005524|GO:0016887
Lja4g0374 857 MobiDBLite consensus disorder prediction 765 780 - -
Lja4g0374 857 Gene3D - 47 354 IPR027417 -
Lja4g0374 857 SMART AAA_5 562 699 IPR003593 -
Lja4g0374 857 MobiDBLite consensus disorder prediction 436 466 - -
Lja4g0374 857 MobiDBLite consensus disorder prediction 436 494 - -
Lja4g0374 857 MobiDBLite consensus disorder prediction 182 239 - -
Lja4g0374 857 Gene3D - 525 697 IPR027417 -
Lja4g0374 857 Coils Coil 758 778 - -
Lja4g0374 857 MobiDBLite consensus disorder prediction 199 239 - -
Lja4g0374 857 CDD AAA 564 697 - -
Lja4g0374 857 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 857 - -
Lja4g0374 857 ProSitePatterns AAA-protein family signature. 669 688 IPR003960 GO:0005524|GO:0016887
Lja4g0374 857 Pfam AAA+ lid domain 720 755 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0374 Lja-Chr4 2994320 3000975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0374 526 771 Calmodulin-binding Proteins AT3G56690 37.751 6.62e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0374 - - gmx:100807464 1429.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0374 4 2994320 3000975 Lja4g0374 4 2994320 3000975 ECH