Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0371 ATGGGCAACTGCAACACCGGCGGCGGCGGAATCGACGGCGCTGCCACCTACTCCGACGAGCCACCACACCGCAATGCCCCCACCGTCCTCCCTCCCAACTACCCCTCACCTCCTGCCCCACTCCCGAATCCCCTCTCTTCCTCCCCCTCCTCCCTTGGCCGCGTCCTCGGCCGCCCCATGGAGGACGTCCGCGCCGTCTACATCTTCGGCCGCGAGCTCGGCCGAGGCCAATTCGGCGTGACCTACCTGGTCACCCACAAGGTCACCAAGGAGCAGTTCGCGTGCAAATCCATCGCCACCCGCAAGCTCATCAACCGCGACGACATCGACGACGTCCGCCGCGAGGTTCAGATCATGCACCACCTCACCGGCCACCGCAACATTGTGGAGCTAAAGGGCGCCTACGAGGACCGCCACTCTGTCAACCTCGTCATGGAGCTCTGTGCCGGCGGCGAGCTCTTCGACAGGATCATCACCAAGGGGCACTACTCCGAGCGCGCCGCCGCTAACTCGTGCCGGCAGATCGTTACGGTGGTGCATAACTGCCACTCCATGGGGGTCATGCATAGGGACTTGAAGCCTGAGAATTTCTTGCTTCTCAACAAGAACGATAACTCGCCTCTTAAGGCCACTGATTTTGGTCTCTCTGTGTTTTTTAAGCCTGGAGATGTGTTTAGAGATCTTGTTGGAAGTGCTTACTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGGCCTGAAGCGGATATTTGGAGTGCTGGGGTTATTTTGTACATTCTGCTATCTGGTGTTCCACCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTGTTCTTCGTGGACATATTGATTTCGTATCAGATCCTTGGCCTTCAATATCAAGTAGCGCAAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTACCGCAGTTGAAGTACTTAATCACCCTTGGATGAGAGTAGATGGAGATGCATCTGATAAGCCTCTTGATATTGCTGTGTTATCCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATAATTGGCTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGTGGAACAATTACTTTTGAAGAGTTGAAAGCTGGTCTTCCTAAATTGGGTAGTAAACTTTCTGAGTCAGAAGTAAAGCAGTTGATGGAAGCAGCTGATGTAGATGGAAATGGAACAATTGATTATATCGAATTTATAACCGCTACCATGCATATGAATAGAATGGAAAGAGAGGATCACCTATATAAAGCCTTTGAATATTTTGACGAGGATAAGAGCGGGTACATCACAACAGAAGAGTTGGAGTCTGCCCTTAAGAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACCATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGAAACCCAGACATCATAACACAAAGACGTCGCAAATAA 1557 0.4913 MGNCNTGGGGIDGAATYSDEPPHRNAPTVLPPNYPSPPAPLPNPLSSSPSSLGRVLGRPMEDVRAVYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIITKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLNKNDNSPLKATDFGLSVFFKPGDVFRDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAVLRGHIDFVSDPWPSISSSAKDLVKKMLRADPKERLTAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVKQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDEDKSGYITTEELESALKKYNMGDEKTIKEIIAEVDTDHDGRINYDEFVAMMRKGNPDIITQRRRK* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0371 518 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Lja4g0371 518 Gene3D Phosphorylase Kinase; domain 1 69 152 - -
Lja4g0371 518 SMART efh_1 408 436 IPR002048 GO:0005509
Lja4g0371 518 SMART efh_1 444 472 IPR002048 GO:0005509
Lja4g0371 518 SMART efh_1 372 400 IPR002048 GO:0005509
Lja4g0371 518 SMART efh_1 479 507 IPR002048 GO:0005509
Lja4g0371 518 Gene3D Transferase(Phosphotransferase) domain 1 153 332 - -
Lja4g0371 518 MobiDBLite consensus disorder prediction 25 45 - -
Lja4g0371 518 Gene3D - 333 508 - -
Lja4g0371 518 Pfam Protein kinase domain 69 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0371 518 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Lja4g0371 518 ProSiteProfiles Protein kinase domain profile. 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0371 518 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Lja4g0371 518 SMART serkin_6 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0371 518 MobiDBLite consensus disorder prediction 1 53 - -
Lja4g0371 518 SUPERFAMILY EF-hand 364 505 IPR011992 -
Lja4g0371 518 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Lja4g0371 518 SUPERFAMILY Protein kinase-like (PK-like) 67 326 IPR011009 -
Lja4g0371 518 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Lja4g0371 518 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Lja4g0371 518 ProSiteProfiles EF-hand calcium-binding domain profile. 440 474 IPR002048 GO:0005509
Lja4g0371 518 Pfam EF-hand domain pair 373 433 IPR002048 GO:0005509
Lja4g0371 518 Pfam EF-hand domain pair 443 505 IPR002048 GO:0005509
Lja4g0371 518 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Lja4g0371 518 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 44 510 - -
Lja4g0371 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Lja4g0371 518 CDD STKc_CAMK 66 324 - -
Lja4g0371 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0371 Lja-Chr4 2963745 2970631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0371 53 517 EF-hand Containing Proteins AT4G23650 80.430 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja4g0371 Pkinase 5.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0371 K13412 - gmx:100777096 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0371 4 2963745 2970631 Lja4g0371 4 2963745 2970631 ECH