Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0359 ATGCCTGAACCTTCCCCCAAGTACATTCAACACCTCAACCGCACCAAACTCCTCATGAAACCAGCACAATTAGAAGAACACACCATTAACAAGAAGCACCCCTGTCCCAGGCTCATTCGAATCCATGTCACCGACGGCGACGCCACCGACTCCGACTCTGACTCCGACACACCCTCCTCCCAGAAGCGCCGCCGGGTGAAAACCTTCGTTCATGAGGTCACCATTGAATATCAAAACGCTGCTTCCAAGAAGAGAAGCAAGGCCAAACCCAGCACCGCCGGCGGTCAAGTCCGGCCAGCTCCGGTGGGAGTGTCCCCCGGCAAGAAATTCAGGGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGAGACCCCTGGCGGCGTGTGCGGCGGTGGCTGGGCACCTACAACACAGCTGAAGAAGCCGCCATTGTGTACGATAAAGCCGCCATTGAGCTTCGCGGCTTTAACGCGCTTACCAATTTCATTCAGCTGCCGGTGGAAAATAAAAACTCCGGCGAAGAATGTGAAAACGTCAACCTGCTTTCTCCGACCTCTGTTCTTCAGTATTCTGAGGAAACAACAGAGTCTGACAATGGTGTTTTCGCTCATCCCATGAGAGAATTAAACCATGAATATGAAAACGAAGAATCTGGGAATTCATGTGATCAAGTTTCAGAAGATAAGTTCGAAACAGAGTCAATCTTTCCCGTTTCAAGTGATGTGGAATTTGACTTTGAGATTCAGAGTGCAATGGATATATTTGACAATGCCCATAAAACCATATGGGAATGCATGTTCTTCCCTGATGACAATTTCTCTGATCAAAGCTTTGTCTTTTGCAGTGAAAGTTGTGATTTCAGTTTCCCAAGTTGGCATAGAGATTATGATCATTTTCAAGATATTGGGGATTTTCTTGTTTCGGATAACAGTTTTGATTCCTTCATTAAACATGATTCTCGTACTTGTATTTCCAATTAA 990 0.4758 MPEPSPKYIQHLNRTKLLMKPAQLEEHTINKKHPCPRLIRIHVTDGDATDSDSDSDTPSSQKRRRVKTFVHEVTIEYQNAASKKRSKAKPSTAGGQVRPAPVGVSPGKKFRGVRQRPWGKWAAEIRDPWRRVRRWLGTYNTAEEAAIVYDKAAIELRGFNALTNFIQLPVENKNSGEECENVNLLSPTSVLQYSEETTESDNGVFAHPMRELNHEYENEESGNSCDQVSEDKFETESIFPVSSDVEFDFEIQSAMDIFDNAHKTIWECMFFPDDNFSDQSFVFCSESCDFSFPSWHRDYDHFQDIGDFLVSDNSFDSFIKHDSRTCISN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0359 329 CDD AP2 108 165 IPR001471 GO:0003700|GO:0006355
Lja4g0359 329 SUPERFAMILY DNA-binding domain 109 165 IPR016177 GO:0003677
Lja4g0359 329 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Lja4g0359 329 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Lja4g0359 329 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Lja4g0359 329 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 312 - -
Lja4g0359 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 7 312 - -
Lja4g0359 329 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Lja4g0359 329 MobiDBLite consensus disorder prediction 79 111 - -
Lja4g0359 329 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Lja4g0359 329 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Lja4g0359 329 MobiDBLite consensus disorder prediction 43 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0359 Lja-Chr4 2851060 2852049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0359 1 312 AP2-EREBP Transcription Factor Family AT4G23750 36.705 5.04e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g0359 AP2 1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0359 - - lja:Lj4g3v3002550.1 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0359 4 2851060 2852049 Lja4g0359 4 2851060 2852049 ECH