Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0352 ATGGCTGACACAGTTGCAGTTGCTGAAGTACCACCAAAGAGGTCCAGGGGTGGCAGAAAGGCGCTGAAGGAGAAAACCCCGTCAACGAACGAGGCAAACATCATAGCTGGGAAGGTTTCTGAATCCTCTGCCTCTCCAATTTCGAAGAATCAGCAGTCGAAGCAGCAATCATTCGAGAAGGACTTGCTTGAGATGCAGGAGAAGATGCAGCAGATGCGTCTCGAGAAGGAGAAGACTGAGGAGCTCTTGAAGGCCAGGGATGAGCTATTGAAACAGAAGGAGGAAGAGCTTGAAAATCGTGGCCGCGAGCAGGAGAAGCTTCAGGTTGAGCTGAAGAAATTGCAGAAGCTGAAGGAGTTCAAACCTACCATGAATTTGCCTATGCTGAAAGAGAAGGAGCAGGATAAGAAGGAGAAGAAGAAGAAGAATGGGGGCTCTGAGACAAAAAGGCCTTCTCCACCTTACATTTTATGGATGAAAGACCAATGGAGTGAGATTAAGAAATCGAACCCCGAGGCCGAATTTAAGGAAATTTCAAACATGCTTGGGGCTAAATGGAAGACAGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAGAGATACCATGCAGAAAAAGAGGCTTACCTGCTGGTGACTGCAAAGGAAAAACGTGAGATTGAGGCAATGAAGCTCTTGGAAGAGGAGCACAAGCAGAAGACTGCTATGGAATTGCTTGAACAGTATATGCAGTTTAAACAAGAGACAGAGAAAGAGGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCTTATTTCTTGTTCACTAATGAAAGAAGGGCAGCTCTTCTTGCTGAGAACATGAAGGTCTTGGAGGTTCCCAAGGTCACAGCTGAAGAGTGGAAAAACATGACAGAAGAACAAAAGAGGCCTTATGAAGAGATGGCAAAGAAGAACAAGGAGAATTATGCTCTGGAAATGGAGGCTTATAAGCAGAAAAAGGATGAGGAGGCTGCTAATCTCATGAAGGAAGAGGAGGAGCATATGAAACTTCAGAAACAGGAAGCCTTGCAACTGCTGAAGAAGAAGGAGAAAACTGAAATCATTATCAAGAAAACAAAACAGAAGAAGAAACAGAACAAGGAGGATAAGATTTCTGATCCAAACAGGCCTAAGAGACCTCCATCCTCATTCCTCATATTCAGAAATGAAGCAAGGAAAAGCTTACAGGAGGAACGACCAGGAGTCAGTAACCCCACCCTCAACGCACTTGTTTCCTTGAAGTGGAAGGAACTGAGTGAGGAAGAAAAACAATTGTGGAATGGCAAAGCATCTGAAGCAATGGAAGCATACAAGAAGGAATTGGAGGAATACAACAAATCCCTTGCAAGCACTGAAGCAACAAACTGA 1407 0.4449 MADTVAVAEVPPKRSRGGRKALKEKTPSTNEANIIAGKVSESSASPISKNQQSKQQSFEKDLLEMQEKMQQMRLEKEKTEELLKARDELLKQKEEELENRGREQEKLQVELKKLQKLKEFKPTMNLPMLKEKEQDKKEKKKKNGGSETKRPSPPYILWMKDQWSEIKKSNPEAEFKEISNMLGAKWKTVSAEEKKPYEERYHAEKEAYLLVTAKEKREIEAMKLLEEEHKQKTAMELLEQYMQFKQETEKEGKKNKKEKDPLKPKHPMSAYFLFTNERRAALLAENMKVLEVPKVTAEEWKNMTEEQKRPYEEMAKKNKENYALEMEAYKQKKDEEAANLMKEEEEHMKLQKQEALQLLKKKEKTEIIIKKTKQKKKQNKEDKISDPNRPKRPPSSFLIFRNEARKSLQEERPGVSNPTLNALVSLKWKELSEEEKQLWNGKASEAMEAYKKELEEYNKSLASTEATN* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0352 468 Pfam HMG (high mobility group) box 148 209 IPR009071 -
Lja4g0352 468 Pfam HMG (high mobility group) box 264 330 IPR009071 -
Lja4g0352 468 Pfam HMG (high mobility group) box 390 458 IPR009071 -
Lja4g0352 468 CDD HMGB-UBF_HMG-box 149 208 - -
Lja4g0352 468 SUPERFAMILY HMG-box 251 336 IPR036910 -
Lja4g0352 468 MobiDBLite consensus disorder prediction 120 154 - -
Lja4g0352 468 SUPERFAMILY HMG-box 135 210 IPR036910 -
Lja4g0352 468 SMART hmgende2 147 217 IPR009071 -
Lja4g0352 468 SMART hmgende2 389 459 IPR009071 -
Lja4g0352 468 SMART hmgende2 263 331 IPR009071 -
Lja4g0352 468 MobiDBLite consensus disorder prediction 120 147 - -
Lja4g0352 468 MobiDBLite consensus disorder prediction 367 417 - -
Lja4g0352 468 Coils Coil 55 117 - -
Lja4g0352 468 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 9 466 IPR044601 GO:0003677
Lja4g0352 468 Coils Coil 440 467 - -
Lja4g0352 468 MobiDBLite consensus disorder prediction 244 265 - -
Lja4g0352 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 148 216 IPR009071 -
Lja4g0352 468 SUPERFAMILY HMG-box 384 464 IPR036910 -
Lja4g0352 468 MobiDBLite consensus disorder prediction 27 59 - -
Lja4g0352 468 MobiDBLite consensus disorder prediction 60 80 - -
Lja4g0352 468 MobiDBLite consensus disorder prediction 1 80 - -
Lja4g0352 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 264 330 IPR009071 -
Lja4g0352 468 Gene3D High mobility group box domain 132 215 IPR036910 -
Lja4g0352 468 Gene3D High mobility group box domain 369 468 IPR036910 -
Lja4g0352 468 Gene3D High mobility group box domain 246 342 IPR036910 -
Lja4g0352 468 MobiDBLite consensus disorder prediction 244 266 - -
Lja4g0352 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 390 458 IPR009071 -
Lja4g0352 468 CDD HMG-box 390 455 - -
Lja4g0352 468 Coils Coil 312 362 - -
Lja4g0352 468 CDD HMGB-UBF_HMG-box 264 327 - -
Lja4g0352 468 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 9 466 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lja4g0352 HMG_box 3.1e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0352 K09273 - gmx:100814709 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0352 4 2814782 2817326 Lja4g0352 4 2814782 2817326 ECH