Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0348 ATGGAGAATGAGTGGAGCTGGGAGCAGAACACTCTCATCAATGAGCTCATTCAGGGGATGGAGGTAGCAAGAAGGTTGAAGGAAGACTTGAAGACACCATATTCTGTTAACACAAGGGATTTGCAGGTGCAGAGGATATTATCTTCTTACGAAAAGGCTCTACAGATTCTAAGATGGAATGAATCAACTTCCAAGTTGCAGACCACGAATGGAGCAACAACTTTGTTATCAGAGTCTCCTCCATTGTCTGCCAATGGAAGTCCTATGAGGGAAGAGATTGATTGGGCTATCCAAGATCACCAGGAGGCTAAACGTGATTCAAAGAAAAGAAAGACTATGCCCAAATGGATAGATCAAATCAGAGTGGTCTCTGAGAATGGCCTCGAAGGACCTCATGATGATGGTTACAACTGGAGAAAATATGGTCAAAAAGACATCCTTGGTGCCAAATATCCAAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGAACTGCTGGGCCACGAAGCAAGTGCAGAGATCGGATGAAGATCCCACAATATTTGACATAACATACAGAGGAAAGCATACCTGTTCTCAGGGAAACGAGGCCGTTCAGCCACACAACTCACCAGAAAAACAACAGAAACTAAACAGTCATAATAATGATAGTCACCATGCAAAGCAAACAAATGAAAGCCTTACAAAGTTGAGAAACACCTTGACTGTCAGAACAGATCATTTGGGAAATCAAGAAATGTCATGTCCTTTCACTTTCCCTTCCACTTCCTTTGGATGCATGGCACAAGAAAACTACAGCTTGATTCCTTCGGCCTTAGAGAACGATTCCTTCCTGAGCAGCCTTTACCAGACACAACTATTATCTACGACAGGAGCAGAATCAAACTATTTCTCATCTCCAACTTTCCAGCTGAACGAGTTTGACGGGGTCTACAACCAGCCACGTTCTGAATCTGATATTACTGAGATCATTTCCACCAACACATCAGCCACCAATTCTCCAATTCTGGATTTCAATTTCTCACTTGATCAAGTGGAACTTGATCCGAATTTCCCCTTCAACACTCCAGGGTTTTTCTCATAA 1086 0.4291 MENEWSWEQNTLINELIQGMEVARRLKEDLKTPYSVNTRDLQVQRILSSYEKALQILRWNESTSKLQTTNGATTLLSESPPLSANGSPMREEIDWAIQDHQEAKRDSKKRKTMPKWIDQIRVVSENGLEGPHDDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQNCWATKQVQRSDEDPTIFDITYRGKHTCSQGNEAVQPHNSPEKQQKLNSHNNDSHHAKQTNESLTKLRNTLTVRTDHLGNQEMSCPFTFPSTSFGCMAQENYSLIPSALENDSFLSSLYQTQLLSTTGAESNYFSSPTFQLNEFDGVYNQPRSESDITEIISTNTSATNSPILDFNFSLDQVELDPNFPFNTPGFFS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0348 361 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g0348 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 357 IPR044810 GO:0003700
Lja4g0348 361 MobiDBLite consensus disorder prediction 193 230 - -
Lja4g0348 361 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g0348 361 MobiDBLite consensus disorder prediction 212 226 - -
Lja4g0348 361 MobiDBLite consensus disorder prediction 193 211 - -
Lja4g0348 361 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g0348 361 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 357 - -
Lja4g0348 361 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g0348 361 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0348 Lja-Chr4 2800493 2801898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0348 7 353 WRKY Transcription Factor Family AT4G11070 38.268 1.84e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g0348 WRKY 1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0348 - - gmx:100815760 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0348 4 2800493 2801898 Lja4g0348 4 2800493 2801898 ECH
Lja4g0348 4 2800493 2801898 Lja1g4885 1 66890087 66892601 ECH
Lja4g0348 4 2800493 2801898 Lja3g1789 3 20176710 20180008 ECH
Lja4g0348 4 2800493 2801898 Lja1g0100 1 813034 814470 ECH