Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0335 ATGACCACTCTACCCTCTTTCTTCTCGCTATTCACCTTCACCATCCTAATTCTCTCTGCAACTTCAGAAACAGAGCCACTCTGTAAAACCACGTCCTGCGAACCCGTTGGACTCCCCATTCAGTTCCCGTTTTCGTTGCGAAACTCCAACCAAAGCCTTCGCTGCGGTTCCCCAGGGTTCGAGCTATCATGTACCAACACCAGGAGCCAATCCCAACCGTTGATTACTCTCCCAGAATCTGGAGACTTCGTCGTCAAACTCATCTCGCTCGTTGAACAGAGGATTTGGATTAACGACCCTGATAACTGCCTCCCTCAACGAATCATGCGTGACCGTGGATTGAATCTTGAGGGCTCACCTTTCAGAATAAGCGATTACTACACTCTTGTTGATTTCTCATTCTTCAACTGTCCTTCCAATATAACCTCTTCACCTTTCGTTGACCCTATCACATGCTTGAATTCAAGCTCTGTTTACAACAGCAGCGACGGAAACGGTAACTATTCGGTGGTGGCGATGATGACGGATCCTCCGTTTCCGACGGCGTGGGTGTCGTCGTGTGACTTGATTACGACGGCGAAGATTCCGGTGGATAATATGCCGTGGCTGTTCTGGACGTATTATAACTCTGATATTCCGTTGCAGTGGGATAATCCTGATTGCAGGAGCTGTGAAGCGCGTGGAGGACGGTGTGGCTTCCGTGATGAACATGATGTTCGTGTTTCTTGTGACGGTCTTCCTTCCCAAAGTCAAGGTTTTTCAAGTAAAACTAAGTATGCTATGGGTATGGGCCTGGGAATACCTGGACTCCTAGGTCTCATTGGGCTTGCATGGATTTTCTGTTGTAAGAAGAACTCAGGTCCTCAACCGCGCCAAACGGGTACTGAATTGTCTACCCTAATTATACCACATCCTTTGGTTGTAACTATGGGCCTTGATGGGGCTGCTATTGAGAGATACCCTAAAACCCAGCTTGGTGAAAGTGGAAGATTGCCCAGGCCCAATGACAACACTTGCTCCATTTGTCTCAGTGAATACCAGCCCATGGAGACGTTGAGGACCATCCCGGAGTGCAATCACTATTTTCATGCCAATTGCATTGATGGATGGTTGAAGATGAATGCTACGTGCCCCTTGTGTAGGAATTTACCAGAGAGATCCCCTTCATTTGCTCCGTCTTTGCCTTTATCTCAAACTTCTCAACAATTGTCAATGTAA 1218 0.4754 MTTLPSFFSLFTFTILILSATSETEPLCKTTSCEPVGLPIQFPFSLRNSNQSLRCGSPGFELSCTNTRSQSQPLITLPESGDFVVKLISLVEQRIWINDPDNCLPQRIMRDRGLNLEGSPFRISDYYTLVDFSFFNCPSNITSSPFVDPITCLNSSSVYNSSDGNGNYSVVAMMTDPPFPTAWVSSCDLITTAKIPVDNMPWLFWTYYNSDIPLQWDNPDCRSCEARGGRCGFRDEHDVRVSCDGLPSQSQGFSSKTKYAMGMGLGIPGLLGLIGLAWIFCCKKNSGPQPRQTGTELSTLIIPHPLVVTMGLDGAAIERYPKTQLGESGRLPRPNDNTCSICLSEYQPMETLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPERSPSFAPSLPLSQTSQQLSM* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0335 405 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 9 404 - -
Lja4g0335 405 Pfam Wall-associated receptor kinase galacturonan-binding 28 99 IPR025287 GO:0030247
Lja4g0335 405 Pfam Ring finger domain 337 381 IPR001841 -
Lja4g0335 405 SMART ring_2 339 380 IPR001841 -
Lja4g0335 405 CDD RING-H2_PA-TM-RING 338 381 - -
Lja4g0335 405 ProSiteProfiles Zinc finger RING-type profile. 339 381 IPR001841 -
Lja4g0335 405 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 404 - -
Lja4g0335 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 385 IPR013083 -
Lja4g0335 405 SUPERFAMILY RING/U-box 334 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0335 Lja-Chr4 2696076 2697929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0335 28 384 C3H Transcription Factor Family AT2G46495 34.986 2.18e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0335 - - lja:Lj4g3v3004070.1 795.808