Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0334 ATGGCTTCCTTAGCCCTGTTCTATGTATTCTACACTCTTCTTTTCCATCTCCAAAGCACTAGAGGCAAACAATTTTGCAACCCCATATCATGCGGTGATGTAGATATTAAATTTCCTTTCGGATTGAAAGGAGCTAATGATAATTGTAGCTACAGTCCGAGGTTTCAACTCTCTTGCAACAACCTCAGCCAAACCATTCTGAAGCTCCCAAATTCAGGGGACTTAATTGTGAAAAGCATTGATTACAGAGCCCAAACCATCCGAGTCAACGATCCAGAAGGTTGTCTACCGAACCGGTTCATGCACGATTGGAACCTCTCCGGTTCACCTTTCAAGCTAAACCCGATTATATACCAAAGCTATTACAATCTCACCTTCCTTCGTTGCCCAAACAACTCGACCGGTTCATCGTCTTTCGGTTTAGCTTGTTTGAGCAATAAAGGGAAAAACAAAAACTCATCAGACACGGACATTAGCTCCTCAATGGTCTTGGTATCGTGGTCTCGGCCTATTGTCTCGTCACTGTCGCAACGATGCGAGGTGATTGGTTGGGGTCGTGTTCCTATTTCGTGGGCCGAGATGCCCATGTGGCCTTTCTGGCCTGATCTCAACAGTGATGTTCGGTTGGTGTGGACTGAACCGTGGTGTGCGAACTGTGCGCTTGATGGTCTTTCAAGAAGTGCCAAATATGGGTTAACTATAGGTGTAGGAATACTTGGGCTATTGTGTCTAATTGGGCTTTCTACCTTTATCTGCGGCAAATTCAGGAGGAACACATATCAGCCCATGCCATTTGCCACTGGGCTTGATGGTGCCACAATTGAGAAGTACCCCAAGACTCTACTTGGGGAAAGTGGTCGCTTTTTGAAGCCTAATGACAATACATGTGCAATTTGTCTCTCTGAATATGAACCTAAAGAAACTTTGAGGAGCATACCTGAGTGCAACCATTATTTTCATGCAGATTGTATAGATCAGTGGCTCAAAATGAATGGGACATGCCCTTTGTGCAGGAATTCACCACCATCAGAGGCATCTTCCACAGTCACCCCTTCTTTTTCTTCATTATTATCCCCCACTTCCTCATCTTCCTCTTCACACTAA 1104 0.4484 MASLALFYVFYTLLFHLQSTRGKQFCNPISCGDVDIKFPFGLKGANDNCSYSPRFQLSCNNLSQTILKLPNSGDLIVKSIDYRAQTIRVNDPEGCLPNRFMHDWNLSGSPFKLNPIIYQSYYNLTFLRCPNNSTGSSSFGLACLSNKGKNKNSSDTDISSSMVLVSWSRPIVSSLSQRCEVIGWGRVPISWAEMPMWPFWPDLNSDVRLVWTEPWCANCALDGLSRSAKYGLTIGVGILGLLCLIGLSTFICGKFRRNTYQPMPFATGLDGATIEKYPKTLLGESGRFLKPNDNTCAICLSEYEPKETLRSIPECNHYFHADCIDQWLKMNGTCPLCRNSPPSEASSTVTPSFSSLLSPTSSSSSSH* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0334 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 223 - -
Lja4g0334 367 SUPERFAMILY RING/U-box 289 341 - -
Lja4g0334 367 SMART ring_2 296 337 IPR001841 -
Lja4g0334 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 343 IPR013083 -
Lja4g0334 367 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 222 366 - -
Lja4g0334 367 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 223 - -
Lja4g0334 367 CDD RING-H2_PA-TM-RING 295 338 - -
Lja4g0334 367 MobiDBLite consensus disorder prediction 344 367 - -
Lja4g0334 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 222 366 - -
Lja4g0334 367 Pfam Wall-associated receptor kinase galacturonan-binding 26 91 IPR025287 GO:0030247
Lja4g0334 367 ProSiteProfiles Zinc finger RING-type profile. 296 338 IPR001841 -
Lja4g0334 367 Pfam Ring finger domain 294 338 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0334 Lja-Chr4 2691169 2693911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0334 24 341 C3H Transcription Factor Family AT2G46495 38.253 2.11e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0334 - - lja:Lj4g3v3004080.1 476.478