Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0325 ATGGAAGCTGATTTCTCGATGAATGATGAAACGGTTACACTCACACATGATCCATTTGATGCCAACCACGATAATGTTAATGTAGATGTCGAAGCGGAACGATGTGGAATTTGCATGGACACTGTTGTTGACAGGGGAGTTCTCGATTGCTGTCAGCACTGGTTCTGCTTTGTGTGCATTGACAACTGGGCTACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACTTGTGTACCAGTATATGATACCATTGGAAGCAATAAAGTTGAAGATGACTCGCTCTACGGAGAGGATGACTGGTCCATTGAAGGGACGAATAACACTCTGTCTTTCCCCTCCTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGAAATGAGTTGTCAACTATTGAAGGAGATTCTGATCTTGATACATCAATCGCTTGTGATTTATGTGATAGATGGTATCATGCCTTTTGCGTGGGATTTGATACTGAAGGTACATCTGAGAGTACATGGTTATGCCCAAGATGTACGGCTGATGAAGTTTCTAAAGGAACAGATACCAATTCAACAGAGAGGGCAACCGTGGAATTTAATCCAGATAATAGCAAGGGAGAGTGTCATGCCGAGGATTCCTTTTCAGGAAAAGTGTCAGTGACTATTGCTGATACTGGAGACACAGATGTTGTTGTCTCAATGATTGGCGGAAATAAATGGGTTTCGGCATCAAGCGAGAAAGATATATTGCCTCTTGAAGTTGATGGGGATCCACTGCCTGAGTCATGTAATTTGATGTCTAACACAAACAATCAAAATCAGGGGACAGAGAAGACAACTATGTCACCAATTAGGGAGGGAGAAGAACTGGAGCTATCATTATCACACAATATGTCCTGCAACCAAACTTCTAAATCCTTGGTGCATGATGATTTAAAGGAAAACGTCAATGGAGCAAGGAGTAAACTGAGTAGCTTTGATGGAACCGAGATACTGGATGTGTCCCATGTTAAAACTAGTCCATCTAGAACTGAATCTGATATGGGTCTTCATCTTGGTTTGTCTGTGGGCTCTATTTTATCTGGAGATGAAACTGAAAACAATGCTTGTAAGGACAATGTCAGAGTCACTGGCGGAAAGAGGAAGCATGTTGATTACAGTTATGAGCAAGTTCATAAAAAAGTTGATGATGGAGATGGCAAGCCTGAACTTTCAGTTGAAGTTTCTCAAAAGAAAATTAGAGTAACTGATGGTCAAATGACTAGTGCTAATGACTCAGCTGATGCTCTTCTTTCTGACAATGCAAGAAAAAAACCTTCTTTAAAACATCCTCCAACCCAGGAGGTTGTGACATCGGATATCATGAATATAGTTAAAGGGACAAACCGGAGGCTTTCCAAGGAACTAACTGGCACTTATGCTTGTGACAAGCTAGCTGAAAAGAAGGAAAGTATGGCTGGATTGAGGGTTAAAAAAATTATGAAGAGAGTTTCTGATGATGGAGAATCATCTTTGATGGTTCAAAATCTACGGAAGGAAATTAGAGAAGCTGTTCGTAACAAATCCTCTATAAAATTTGAGGAAAACCATTTTGATCCAAAGCTTCTTGAAGCATTTAGGGCTGCTATAACGGGGCCAAAAACTGAACTTGTAAATAAGTTATCCCCTTCAGCTCTAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTACGTGAAAATCTAACAAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGGGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCACGAGAGCTTCGAAGCCTGAAAAGATCGAAACTTTGAAGTCAGTTCTTGATCTACTAAGAGGAAGTTCAGAGAACCTAGAATCAAAGCAAACTTCTGAATTTGAGGCCAAGAATTCTATCCTTTCTAGATTGTATCTGGCAGATACATCTGTTTTCCCACGGAAAGAGGATGTGAAACCTCTCTCTGTGCATACAACTATTGCTAGTTCTGATCAGACTAAACAAAATAACCCACCAGGAAAAGGATCAAATCTATCTCTTGATAACAATTCTGTTAAAACAACAGAAGTAAATAATCTTGTATTGAAGGCCAAAGTCTGTTCATCTGGAAAAAAAGTGGATAAGAAGATTTTACATGGTCTAGTTGGTGATAAGTTGGCTTCTGGCAAAGTAAGTCGCTCTGAAGGGACATTGATTTCTTCTTCAACTGGTGCCAAAGTAGACACAAAGGAGTCAGGGCTTAAGTCTGATTCTATGAAGGGTGATAAAAGAAAATGGGCATTGGAGGTTCTTGCGAGGAAAACAGCTGCTGCAAGCAGGAACACAGCAAATGAAAGTCAGGAAGACAATGCAATGTTTAAAGGATATCCTTTGCTTGCCCAATTACCAGCTGATATGAGACCAGTGCTGGAAGCTTGTCGCCACAATAAAATCCCTATATCAGTGAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAACCTGCCAGTCATGTGCAGATCTGCAGATACAGAATTGGCTGTTGCAGATGCTATTAATATTGAAAAAGGGGTTGCTGACAGATCAAACAGCAAGCTCGTGTATCTGAACCTTTGCTCACAAGAACTCTTGCATTGCAAAAACAACACAAAATTGACTGCAACTACAGATGCAAATCCACCAGCCTCATCACCAGTGCATACTGATCAATCAGAACCGAGTACTGATGATCTTTTGACTGACCCAGAAGTTCAAATAGCCTTGAAAAATGCCGGTCTATTGGGTGATTCACCTCCTGGCAGTCCATGTAAGGACAAAGAAACGTGTAATGAAGATGGTGTGTCAGGGCCCGAAAATATACTTGAACTGGATTCTCATCCTGAGCTGGACATTTATGGTGATTTTGAGTATGACTTGGAGGATGAAGATTTCATCGGTTCTAGTGTCTCAAAGGTCTCCAACCTAAAGCAAGAGCAAAGTGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTCAAAAACACAGATAATGTTTTGGATTGTACAGACTGTGAGAGGTCTGAAAACAAGGAAGTGCCAGGAGATGCTCCCTGCTCACCAAAATGTAGCAATGATGCAGTCCATAGCGAGTCTACAAATGAGGCGGGTATTGGCCAGCGTTCTGTTTCTTCTGAGCAACTACTATGTAAGGGTGATGTTGAGCCAGCTGATTCAGAATTCGAAGAGTTATATGGCCCCGACAAAGAACCACTTATAAAAAAATTCCCAGATGTTGAATCAAGATCCTTATGTGGAGAAGGAAAGACAGATACTTTGACTGAGGCCAATTATTGCCATAATGATGAAAAACATGTCTTAGACAAAACAGTTAATGCTTCCAAACTCAGCAATGACAAATCTGCTACTGTATCTGAGACTGGTGAAAAAATCCGAAAGGAGGAAGAGAAATCTGACATTGCTGCTAAGCAGTCTGATTCTGTAAATCATGTAGCAAGGAAGGTAGAAGCATACATCAAAGAGCATATTAGGCCACTGTGCAAGAGTGGTGTGATCACGGCTGAACAATACCGGTGGGCTGTTGCAAAAACAACTGAAAAGGTTATGAAGTATCATTCCAAATCAAAGAATGCTAATTTCCTCATTAAGGAAGGGGAGAAAGTAAAGAAACTTGCCGAGGAGTATGTTGAAGCAGCCCAACAGAAATAG 3753 0.4085 MEADFSMNDETVTLTHDPFDANHDNVNVDVEAERCGICMDTVVDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDDSLYGEDDWSIEGTNNTLSFPSYYIDENAVICLDGDGCKIRNELSTIEGDSDLDTSIACDLCDRWYHAFCVGFDTEGTSESTWLCPRCTADEVSKGTDTNSTERATVEFNPDNSKGECHAEDSFSGKVSVTIADTGDTDVVVSMIGGNKWVSASSEKDILPLEVDGDPLPESCNLMSNTNNQNQGTEKTTMSPIREGEELELSLSHNMSCNQTSKSLVHDDLKENVNGARSKLSSFDGTEILDVSHVKTSPSRTESDMGLHLGLSVGSILSGDETENNACKDNVRVTGGKRKHVDYSYEQVHKKVDDGDGKPELSVEVSQKKIRVTDGQMTSANDSADALLSDNARKKPSLKHPPTQEVVTSDIMNIVKGTNRRLSKELTGTYACDKLAEKKESMAGLRVKKIMKRVSDDGESSLMVQNLRKEIREAVRNKSSIKFEENHFDPKLLEAFRAAITGPKTELVNKLSPSALKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCTRASKPEKIETLKSVLDLLRGSSENLESKQTSEFEAKNSILSRLYLADTSVFPRKEDVKPLSVHTTIASSDQTKQNNPPGKGSNLSLDNNSVKTTEVNNLVLKAKVCSSGKKVDKKILHGLVGDKLASGKVSRSEGTLISSSTGAKVDTKESGLKSDSMKGDKRKWALEVLARKTAAASRNTANESQEDNAMFKGYPLLAQLPADMRPVLEACRHNKIPISVRQTQLYRLTERLLRNTNLPVMCRSADTELAVADAINIEKGVADRSNSKLVYLNLCSQELLHCKNNTKLTATTDANPPASSPVHTDQSEPSTDDLLTDPEVQIALKNAGLLGDSPPGSPCKDKETCNEDGVSGPENILELDSHPELDIYGDFEYDLEDEDFIGSSVSKVSNLKQEQSESKVKLVFSTMNFKNTDNVLDCTDCERSENKEVPGDAPCSPKCSNDAVHSESTNEAGIGQRSVSSEQLLCKGDVEPADSEFEELYGPDKEPLIKKFPDVESRSLCGEGKTDTLTEANYCHNDEKHVLDKTVNASKLSNDKSATVSETGEKIRKEEEKSDIAAKQSDSVNHVARKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHSKSKNANFLIKEGEKVKKLAEEYVEAAQQK* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0325 1250 MobiDBLite consensus disorder prediction 673 700 - -
Lja4g0325 1250 PANTHER RING FINGER PROTEIN 41, 151 105 1250 - -
Lja4g0325 1250 ProSiteProfiles Zinc finger RING-type profile. 35 74 IPR001841 -
Lja4g0325 1250 MobiDBLite consensus disorder prediction 1146 1170 - -
Lja4g0325 1250 Coils Coil 513 533 - -
Lja4g0325 1250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 96 IPR013083 -
Lja4g0325 1250 MobiDBLite consensus disorder prediction 1053 1070 - -
Lja4g0325 1250 PANTHER RING/U-BOX PROTEIN 105 1250 - -
Lja4g0325 1250 ProSiteProfiles Zinc finger PHD-type profile. 67 187 IPR019787 -
Lja4g0325 1250 MobiDBLite consensus disorder prediction 1039 1070 - -
Lja4g0325 1250 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Lja4g0325 1250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 186 IPR013083 -
Lja4g0325 1250 SUPERFAMILY FYVE/PHD zinc finger 148 187 IPR011011 -
Lja4g0325 1250 SMART ring_2 125 184 IPR001841 -
Lja4g0325 1250 SMART ring_2 35 73 IPR001841 -
Lja4g0325 1250 SUPERFAMILY RING/U-box 30 80 - -
Lja4g0325 1250 Pfam Ring finger domain 34 74 IPR001841 -
Lja4g0325 1250 MobiDBLite consensus disorder prediction 1153 1170 - -
Lja4g0325 1250 MobiDBLite consensus disorder prediction 902 926 - -
Lja4g0325 1250 Pfam PHD-finger 148 186 IPR019787 -
Lja4g0325 1250 SMART PHD_3 133 185 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0325 Lja-Chr4 2607359 2616750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0325 35 86 C3H Transcription Factor Family AT3G58030 37.037 1.36e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja4g0325 PHD 1.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0325 - - lja:Lj4g3v3014190.2 1981.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0325 4 2607359 2616750 Lja4g0325 4 2607359 2616750 ECH