Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0321 ATGGAGAATGATCCCGAAACCAAAGCAAGAATCGAGGAAGCTGTTCGGAAGATTCTCGAAGAATCAAACATGGACGAGGTCACCGAGTCCAAGATTCGCAAGCAAGCCTCCACTGAACTCGGCCTCGACCTCTCTGTTCCACCCTTCAAAGCCTTCGTCAAGCAGGTCGTGCAAGCTTTTCTCGAAGAGAAGCAACAGCAGCTGGAAGAACAACAACAAGAGGAAGGAGGAGGAGTTACCCAGGACAAGGAGTTCGATGATGATGGCGATCTCATCATCTGCAAGCTTTCGGAGAAGAGGAAGGTGACGATTCAGGATTTCAGAGGGAAAACACTGGTCTCCATTCGGGAGTATTACAGAAAGGATGGGAAGGACTTACCTACTTCAAAAGGAATAAGTTTGACAGAGGAGCAGTGGTCTACATTCAAGAAAAATGTGCCTGCCGTAGAAAAAGCCATTGAGAAAATGGAGTCACGCATATAA 483 0.472 MENDPETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAFLEEKQQQLEEQQQEEGGGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVEKAIEKMESRI* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0321 160 Pfam Transcriptional Coactivator p15 (PC4) 94 145 IPR003173 GO:0003677|GO:0006355
Lja4g0321 160 Gene3D Transcriptional Coactivator Pc4; Chain A 83 160 IPR009044 GO:0003677|GO:0006355
Lja4g0321 160 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP 5 159 - -
Lja4g0321 160 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 5 159 IPR045125 GO:0003713|GO:0060261
Lja4g0321 160 PIRSF RNA_polymII_KELP 1 160 IPR017415 -
Lja4g0321 160 Pfam DEK C terminal domain 6 61 IPR014876 -
Lja4g0321 160 SUPERFAMILY DEK C-terminal domain 3 62 - -
Lja4g0321 160 Coils Coil 54 74 - -
Lja4g0321 160 SUPERFAMILY ssDNA-binding transcriptional regulator domain 93 155 IPR009044 GO:0003677|GO:0006355
Lja4g0321 160 Gene3D - 1 64 - -
Lja4g0321 160 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0321 Lja-Chr4 2582216 2585003 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Lja4g0321 DEK_C 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0321 K25815 - gmx:100305633 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0321 4 2582216 2585003 Lja4g0321 4 2582216 2585003 ECH