Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0315 ATGGGTGTTCCTCAAACTCCAAACCCTTCTCCTCCACATAAGTATCCACAAGAACTTCAGCTTAAACTTTATCAAGCCTTCATATTCTCAATTCCTATACTCTTTTCCATAATTCTCATTCTCCTGTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTCTCTCATACCCTCCTCCTCTTCACCTACTTCCCATAACTGCAAATCCTCATCAAACTTCATATCGCTATCGTTCCTCATCACCTTGCCGTTTAAATTTGGCGGTGCAAATTCTGGACAAACTTCCAAGAGTTTTATTTGATGAGGATTTGAGAACAAGGGATTCAGTATGTTGTGTTTGTCTTGGAGAATTTGAGCTGAAAGAAGAGCTGCTACAGATTCCTTATTGCAAGCACATGTTTCACATAGAGTGCATAGATAACTGGTTGCAATCAAACTCCACATGTCCACTTTGTAGATGTTCCATCATCCCCACATCAAAGTTCCTCAATCCACCACCACTTGTTGTGCAAGACCCACCTCATCAAGGTGCTATTTCAGGTTCTCCATCACACATCATATCATCACCAACACCCCAACTAGGAGGTGAAGCTGGTGCTTCCTCAATTACTAACAATTTTCAAGAGAATGATGTACCAACTAGATGA 648 0.412 MGVPQTPNPSPPHKYPQELQLKLYQAFIFSIPILFSIILILLFYLFYLKRRASSLSYPPPLHLLPITANPHQTSYRYRSSSPCRLNLAVQILDKLPRVLFDEDLRTRDSVCCVCLGEFELKEELLQIPYCKHMFHIECIDNWLQSNSTCPLCRCSIIPTSKFLNPPPLVVQDPPHQGAISGSPSHIISSPTPQLGGEAGASSITNNFQENDVPTR* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0315 215 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lja4g0315 215 SMART ring_2 111 152 IPR001841 -
Lja4g0315 215 SUPERFAMILY RING/U-box 89 162 - -
Lja4g0315 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 3 169 - -
Lja4g0315 215 MobiDBLite consensus disorder prediction 177 215 - -
Lja4g0315 215 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 169 - -
Lja4g0315 215 MobiDBLite consensus disorder prediction 173 215 - -
Lja4g0315 215 Pfam Ring finger domain 111 153 IPR001841 -
Lja4g0315 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 158 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0315 Lja-Chr4 2555500 2558224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0315 7 198 C3H Transcription Factor Family AT4G10150 38.542 7.79e-38 129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0315 4 2555500 2558224 Lja4g0315 4 2555500 2558224 ECH