Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0303 ATGGCACTCCACACACGCAAACTGCACCTCCTTCTAACATGTCTATTTCTGTTCTTCTCACCACTAACACCACTCACCACCGTTACAGCCATGGTTGCCGCTGCTGTTCTTCCCGTCAAGCCTTCAACCCCTCTCGTTTCCTTCCTCGAACGCCTCCAACACACCGCCTTCGAATCCTTCGCCGGCGGCGGCGACAACGACGGCGAACCTTCCCACTTCGACCCGAAGACTTACGTCGATTTGCCTCTCAAGTTCAGCCTCGCTGTCACCGATGACGCGTTCCAGAACCTTCCACGGGCGGCGAATGGGTCAATCCCGGCCCGTGAGTTGAAGAGTTTTCTAGAAGGCTATTTTGAGGATGCAGGGGATGATCTGGTGCACGTTGATCCAGAGGATTTTGTTCCTGAGCCTGAGGGTTTCTTGCCGAAGGTGAAGAACCTTGAGGTGAGAGCGTGGGCGATTCAGGTTCATTCGTTGTGGAAGAATCTGACCCGGAAGGTGTCTGGTTCGGTTGTGGCTGAACCGGAGTTGCATACTCTGCTTCCTCTGCCGGCTTCTGCTGTGGTTCCCGGTTCAAGGTTTCGTGAGGTTTATTACTGGGATTCCTATTGGGTGATCAGGGGTTTGTTGGTGAGTAAAATGTACAAGACTGCTACTGATATTGTCATGAATCTCATTCACATGATAGAGGAATATGGGTTCGTGCTTAATGGTGCTAGAGCTTACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCTATGATTTATGAGATATACTGTAGCACTGGCAACATAGAATTAGTCAAAAGGTCTCTCCCTGCGCTACTGAAAGAGCATGAGTTTTGGAATTCAGATATACATAAAGTGACCATTTTGGATGCTCAAGGTTGCACTCACAACCTAAATCGTTATAATGCAATGTGGAACAAACCCAGGCCAGAATCATCCATACAAGACAAGACATCTGCTTCCAAGTTCTCAAAAATTTCAGAAAAACAACATTTTTACCGTCAACTGGCATCAGCTGCTGAATCAGGATGGGACTTCAGCACAAGATGGATGAGAGATCCTCCTGATTTCACAACATTGTCTACAACATCAGTAATACCTGTTGATTTAAATGCATTTCTACTTGGGATGGAGCATAATATTGCTTTCTTTGCAAAAGTTACTGGAGATAATAGTACTGCTGAACACTTTCTGCAAATTTCTGATCTTAGAAAGAAGTCAATGAACTCTGTTTTCTGGAACTCAAACATGACTCAATGGCTTGATTACTGGCTCAGTGATAGCACATCTGAGGAGATTCAAGTTTTGAAAACCACGCAGCAGAATGAAAATGCATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAGCCATTTTACTCAGGTATTCTTAATTGA 1407 0.4563 MALHTRKLHLLLTCLFLFFSPLTPLTTVTAMVAAAVLPVKPSTPLVSFLERLQHTAFESFAGGGDNDGEPSHFDPKTYVDLPLKFSLAVTDDAFQNLPRAANGSIPARELKSFLEGYFEDAGDDLVHVDPEDFVPEPEGFLPKVKNLEVRAWAIQVHSLWKNLTRKVSGSVVAEPELHTLLPLPASAVVPGSRFREVYYWDSYWVIRGLLVSKMYKTATDIVMNLIHMIEEYGFVLNGARAYYTNRSQPPLLSAMIYEIYCSTGNIELVKRSLPALLKEHEFWNSDIHKVTILDAQGCTHNLNRYNAMWNKPRPESSIQDKTSASKFSKISEKQHFYRQLASAAESGWDFSTRWMRDPPDFTTLSTTSVIPVDLNAFLLGMEHNIAFFAKVTGDNSTAEHFLQISDLRKKSMNSVFWNSNMTQWLDYWLSDSTSEEIQVLKTTQQNENAFASNFVPLWMKPFYSGILN* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0303 468 PANTHER TREHALASE 39 463 IPR001661 GO:0004555|GO:0005991
Lja4g0303 468 Pfam Trehalase 73 463 IPR001661 GO:0004555|GO:0005991
Lja4g0303 468 PRINTS Glycosyl hydrolase family 37 signature 302 319 IPR001661 GO:0004555|GO:0005991
Lja4g0303 468 PRINTS Glycosyl hydrolase family 37 signature 369 386 IPR001661 GO:0004555|GO:0005991
Lja4g0303 468 PRINTS Glycosyl hydrolase family 37 signature 232 250 IPR001661 GO:0004555|GO:0005991
Lja4g0303 468 PRINTS Glycosyl hydrolase family 37 signature 412 428 IPR001661 GO:0004555|GO:0005991
Lja4g0303 468 PRINTS Glycosyl hydrolase family 37 signature 337 354 IPR001661 GO:0004555|GO:0005991
Lja4g0303 468 SUPERFAMILY Six-hairpin glycosidases 71 460 IPR008928 GO:0005975
Lja4g0303 468 PANTHER TREHALASE 39 463 - -
Lja4g0303 468 Gene3D - 70 463 IPR012341 GO:0005975
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0303 38 464 Trehalose Biosynthesis Gene Families AT4G24040 55.581 2.06e-171 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0303 K01194 - gmx:547539 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0303 4 2451173 2456262 Lja4g0303 4 2451173 2456262 ECH