Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja4g0301 | ATGGAGGGTTTTGGTGAGGATCAATTCTATGACACGCGTGAGGAACTGTGTTCTGTGTCTGATTTGGGTTCAGATTGTTCAGGGTCAGCTGATGAATCTAGTTCTGGTAATGGATATGTTACCAGGTACCAGGTTTGGACAAACAACCTTGAAAGCGTTCACCAGCGACGCCTCAATTTCCTGAGATGGATGGGTTTTGAATCTGATGTGAATTCAATGAAAGGGGAAGAGTTGGCAGATCCGTGTTATGGAGTTGACCGAGTCACAGCCACCAGTGGGGCTGTGCTGAGAACTTCAGACCAGATTGTTTTGTCAGCTGAGGATTCGAGCTCGTTGGGAAACCGCGGTGATGCGGCTAATTTGGATTGTATGATAAAGAATTTGGATGATGGAACACAGTATGTTGTGGATAAACTGGGTCAAGATGGGACGCTTAGTACCCTGCGTGTTCTCGGGTCGAATCAATTGATCAGCTTGGAAGATTTTCAGAGAGATATTGGACCGTCGCAAATGGTTCGCAGACACTTGCAGAGAGATGCTGAAAACACAAAACACTTGGGTGTTGCACAAAAGAAAATGAAGAAGGGATGGCTGAGGAAACTAGATGCTATGGCTTGTATGTTCCATCATCAAGGGCTTGATGAACCTTACTGCAAAGACTTTGATTCAGTTGATAGAACTGGGATGCAAAGAGTTCGAGCTCATCCATATAAGAAGCAATTTAAGGAGCTTTCCTCTCTTTACACTGAACAGGAGTTCAAAGCTCATAAGGGTGTTATTTTAACAATGAAGTTCAGTCTTGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGGCATTGTGCGGGTGTGGAAGGTGGTTGAGAATGAAAGATCGAATGAATTGGACATTCTGGACAATGATCGGTCAAATGTATATTTCAAAATGAATAGTTTTTCATGTGTAGCTCCCCTTCATGTAGATAAAGAGAAACTAGATAAAACAGAGAAGTTGAAGAGATCATCTGATTTAACTTGTGTGGTTATCCCGCCAAAGACCTTCCGCATATCGGCGAAACCTTTGCATGAATTCCACGGACATCGTGGTGACATTTTAGACCTTTCATGGTCCAAAAGAGGGCTTCTACTTTCATCCTGTGTTGATAAAACAGTGCGTTTATGGCAAGTAGGAATCGATAAATGTCTTAGAATTTTCTCCCACAATAATTATGTGACATGTGTAAATTTCAATCCTGTCAATGATAATTTTTTCATCAGTGGTTCAATTGATGGAAAAGTGCGCATCTGGGAAGTTGTTCGGTGTCGGGTTGTTGATTACATTGATACCAGAGAGATAGTCACAGCTGTGTGCTTCCAACCTGATGGAAAGGGCACAATTGTGGGTACAATGCGAGGCAATTGCCGTTTCTATGATCTTCGAGATAATCATATGCAATTGGATGCTCAATTGGGTTTACAAGGAAAAAAGAAGACATCAGGAAAAAGGATCACTGGCTTTCAGTTTTCACCAAGTGATCCAAGCAAATTATTGGTTGCTTCTGCTGACTCACATGTCTGTATACTTTCTGGAGTTGATGTCATCTACAAATTCAAAGGCCTAAGAAGTGCTGGTCAGATGCAAGCTTCCTTCACCTCTGATGGGAAACATATTGTCTCAGTTAGTGAGGGTTCAAATGTTAGTATCTGGAACTACACTGGCCATGACAGGAACAATTCCAAAACAAAGAAGGTTTGGTCTTCTGAGAGTTTTGCATCCCACAATGCAGCAATTGCTATACCTTGGTGTGGCATTGAGTCAATGCCAGGAACAATCTTGTCCCCATCTCTGAAAGAGGATATGAATCACAAGTTATCTCTGTCTTCTCCTGACTGCTTCTTCTTGGGTCGCGGATTTCTGTCGGAGTTAGTCCCGAAGGTTTCTCCAACCTGGCCTGAAGAGGCACTTGTGGATTCACATCAAACGGTTGCTTCTCCTAAAATGTGTAAATCAGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCTCACCTTTGGGGCCAAGTAATTGTAACAGCAGGAAAGGATGGACACATAAGAGTGTACCAGAATTACGGGTTACCTGTTCGTGTTTGA | 2121 | 0.4253 | MEGFGEDQFYDTREELCSVSDLGSDCSGSADESSSGNGYVTRYQVWTNNLESVHQRRLNFLRWMGFESDVNSMKGEELADPCYGVDRVTATSGAVLRTSDQIVLSAEDSSSLGNRGDAANLDCMIKNLDDGTQYVVDKLGQDGTLSTLRVLGSNQLISLEDFQRDIGPSQMVRRHLQRDAENTKHLGVAQKKMKKGWLRKLDAMACMFHHQGLDEPYCKDFDSVDRTGMQRVRAHPYKKQFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLASGGEDGIVRVWKVVENERSNELDILDNDRSNVYFKMNSFSCVAPLHVDKEKLDKTEKLKRSSDLTCVVIPPKTFRISAKPLHEFHGHRGDILDLSWSKRGLLLSSCVDKTVRLWQVGIDKCLRIFSHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVRCRVVDYIDTREIVTAVCFQPDGKGTIVGTMRGNCRFYDLRDNHMQLDAQLGLQGKKKTSGKRITGFQFSPSDPSKLLVASADSHVCILSGVDVIYKFKGLRSAGQMQASFTSDGKHIVSVSEGSNVSIWNYTGHDRNNSKTKKVWSSESFASHNAAIAIPWCGIESMPGTILSPSLKEDMNHKLSLSSPDCFFLGRGFLSELVPKVSPTWPEEALVDSHQTVASPKMCKSEYKFLRSACKGMSNSHLWGQVIVTAGKDGHIRVYQNYGLPVRV* | 707 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja4g0301 | 706 | SMART | WD40_4 | 350 | 388 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | SMART | WD40_4 | 523 | 563 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | SMART | WD40_4 | 391 | 430 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | SMART | WD40_4 | 658 | 698 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | SMART | WD40_4 | 246 | 285 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | SMART | WD40_4 | 433 | 471 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | SMART | WD40_4 | 486 | 522 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | PRINTS | G protein beta WD-40 repeat signature | 272 | 286 | IPR020472 | - | |
Lja4g0301 | 706 | PRINTS | G protein beta WD-40 repeat signature | 417 | 431 | IPR020472 | - | |
Lja4g0301 | 706 | PRINTS | G protein beta WD-40 repeat signature | 375 | 389 | IPR020472 | - | |
Lja4g0301 | 706 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 397 | 431 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | PANTHER | TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN | 6 | 706 | - | - | |
Lja4g0301 | 706 | Pfam | WD domain, G-beta repeat | 352 | 387 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | Pfam | WD domain, G-beta repeat | 393 | 429 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | Pfam | WD domain, G-beta repeat | 251 | 285 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 253 | 294 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 357 | 389 | IPR001680 | GO:0005515 | |
Lja4g0301 | 706 | SUPERFAMILY | WD40 repeat-like | 247 | 697 | IPR036322 | GO:0005515 | |
Lja4g0301 | 706 | Gene3D | - | 245 | 484 | IPR015943 | GO:0005515 | |
Lja4g0301 | 706 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 357 | 389 | - | - | |
Lja4g0301 | 706 | PANTHER | WD REPEAT DOMAIN 44 | 6 | 706 | IPR040324 | - | |
Lja4g0301 | 706 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 253 | 286 | - | - | |
Lja4g0301 | 706 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 397 | 431 | - | - | |
Lja4g0301 | 706 | Gene3D | - | 487 | 699 | IPR015943 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja4g0301 | Lja-Chr4 | 2428777 | 2433219 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja4g0301 | 357 | 551 | Miscellaneous Gene Families | AT5G08390 | 26.000 | 6.09e-08 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja4g0301 | - | - | gmx:100788374 | 1145.18 |