Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0301 ATGGAGGGTTTTGGTGAGGATCAATTCTATGACACGCGTGAGGAACTGTGTTCTGTGTCTGATTTGGGTTCAGATTGTTCAGGGTCAGCTGATGAATCTAGTTCTGGTAATGGATATGTTACCAGGTACCAGGTTTGGACAAACAACCTTGAAAGCGTTCACCAGCGACGCCTCAATTTCCTGAGATGGATGGGTTTTGAATCTGATGTGAATTCAATGAAAGGGGAAGAGTTGGCAGATCCGTGTTATGGAGTTGACCGAGTCACAGCCACCAGTGGGGCTGTGCTGAGAACTTCAGACCAGATTGTTTTGTCAGCTGAGGATTCGAGCTCGTTGGGAAACCGCGGTGATGCGGCTAATTTGGATTGTATGATAAAGAATTTGGATGATGGAACACAGTATGTTGTGGATAAACTGGGTCAAGATGGGACGCTTAGTACCCTGCGTGTTCTCGGGTCGAATCAATTGATCAGCTTGGAAGATTTTCAGAGAGATATTGGACCGTCGCAAATGGTTCGCAGACACTTGCAGAGAGATGCTGAAAACACAAAACACTTGGGTGTTGCACAAAAGAAAATGAAGAAGGGATGGCTGAGGAAACTAGATGCTATGGCTTGTATGTTCCATCATCAAGGGCTTGATGAACCTTACTGCAAAGACTTTGATTCAGTTGATAGAACTGGGATGCAAAGAGTTCGAGCTCATCCATATAAGAAGCAATTTAAGGAGCTTTCCTCTCTTTACACTGAACAGGAGTTCAAAGCTCATAAGGGTGTTATTTTAACAATGAAGTTCAGTCTTGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGGCATTGTGCGGGTGTGGAAGGTGGTTGAGAATGAAAGATCGAATGAATTGGACATTCTGGACAATGATCGGTCAAATGTATATTTCAAAATGAATAGTTTTTCATGTGTAGCTCCCCTTCATGTAGATAAAGAGAAACTAGATAAAACAGAGAAGTTGAAGAGATCATCTGATTTAACTTGTGTGGTTATCCCGCCAAAGACCTTCCGCATATCGGCGAAACCTTTGCATGAATTCCACGGACATCGTGGTGACATTTTAGACCTTTCATGGTCCAAAAGAGGGCTTCTACTTTCATCCTGTGTTGATAAAACAGTGCGTTTATGGCAAGTAGGAATCGATAAATGTCTTAGAATTTTCTCCCACAATAATTATGTGACATGTGTAAATTTCAATCCTGTCAATGATAATTTTTTCATCAGTGGTTCAATTGATGGAAAAGTGCGCATCTGGGAAGTTGTTCGGTGTCGGGTTGTTGATTACATTGATACCAGAGAGATAGTCACAGCTGTGTGCTTCCAACCTGATGGAAAGGGCACAATTGTGGGTACAATGCGAGGCAATTGCCGTTTCTATGATCTTCGAGATAATCATATGCAATTGGATGCTCAATTGGGTTTACAAGGAAAAAAGAAGACATCAGGAAAAAGGATCACTGGCTTTCAGTTTTCACCAAGTGATCCAAGCAAATTATTGGTTGCTTCTGCTGACTCACATGTCTGTATACTTTCTGGAGTTGATGTCATCTACAAATTCAAAGGCCTAAGAAGTGCTGGTCAGATGCAAGCTTCCTTCACCTCTGATGGGAAACATATTGTCTCAGTTAGTGAGGGTTCAAATGTTAGTATCTGGAACTACACTGGCCATGACAGGAACAATTCCAAAACAAAGAAGGTTTGGTCTTCTGAGAGTTTTGCATCCCACAATGCAGCAATTGCTATACCTTGGTGTGGCATTGAGTCAATGCCAGGAACAATCTTGTCCCCATCTCTGAAAGAGGATATGAATCACAAGTTATCTCTGTCTTCTCCTGACTGCTTCTTCTTGGGTCGCGGATTTCTGTCGGAGTTAGTCCCGAAGGTTTCTCCAACCTGGCCTGAAGAGGCACTTGTGGATTCACATCAAACGGTTGCTTCTCCTAAAATGTGTAAATCAGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCTCACCTTTGGGGCCAAGTAATTGTAACAGCAGGAAAGGATGGACACATAAGAGTGTACCAGAATTACGGGTTACCTGTTCGTGTTTGA 2121 0.4253 MEGFGEDQFYDTREELCSVSDLGSDCSGSADESSSGNGYVTRYQVWTNNLESVHQRRLNFLRWMGFESDVNSMKGEELADPCYGVDRVTATSGAVLRTSDQIVLSAEDSSSLGNRGDAANLDCMIKNLDDGTQYVVDKLGQDGTLSTLRVLGSNQLISLEDFQRDIGPSQMVRRHLQRDAENTKHLGVAQKKMKKGWLRKLDAMACMFHHQGLDEPYCKDFDSVDRTGMQRVRAHPYKKQFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLASGGEDGIVRVWKVVENERSNELDILDNDRSNVYFKMNSFSCVAPLHVDKEKLDKTEKLKRSSDLTCVVIPPKTFRISAKPLHEFHGHRGDILDLSWSKRGLLLSSCVDKTVRLWQVGIDKCLRIFSHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVRCRVVDYIDTREIVTAVCFQPDGKGTIVGTMRGNCRFYDLRDNHMQLDAQLGLQGKKKTSGKRITGFQFSPSDPSKLLVASADSHVCILSGVDVIYKFKGLRSAGQMQASFTSDGKHIVSVSEGSNVSIWNYTGHDRNNSKTKKVWSSESFASHNAAIAIPWCGIESMPGTILSPSLKEDMNHKLSLSSPDCFFLGRGFLSELVPKVSPTWPEEALVDSHQTVASPKMCKSEYKFLRSACKGMSNSHLWGQVIVTAGKDGHIRVYQNYGLPVRV* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0301 706 SMART WD40_4 350 388 IPR001680 GO:0005515
Lja4g0301 706 SMART WD40_4 523 563 IPR001680 GO:0005515
Lja4g0301 706 SMART WD40_4 391 430 IPR001680 GO:0005515
Lja4g0301 706 SMART WD40_4 658 698 IPR001680 GO:0005515
Lja4g0301 706 SMART WD40_4 246 285 IPR001680 GO:0005515
Lja4g0301 706 SMART WD40_4 433 471 IPR001680 GO:0005515
Lja4g0301 706 SMART WD40_4 486 522 IPR001680 GO:0005515
Lja4g0301 706 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Lja4g0301 706 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Lja4g0301 706 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Lja4g0301 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 431 IPR001680 GO:0005515
Lja4g0301 706 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 706 - -
Lja4g0301 706 Pfam WD domain, G-beta repeat 352 387 IPR001680 GO:0005515
Lja4g0301 706 Pfam WD domain, G-beta repeat 393 429 IPR001680 GO:0005515
Lja4g0301 706 Pfam WD domain, G-beta repeat 251 285 IPR001680 GO:0005515
Lja4g0301 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
Lja4g0301 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 389 IPR001680 GO:0005515
Lja4g0301 706 SUPERFAMILY WD40 repeat-like 247 697 IPR036322 GO:0005515
Lja4g0301 706 Gene3D - 245 484 IPR015943 GO:0005515
Lja4g0301 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 389 - -
Lja4g0301 706 PANTHER WD REPEAT DOMAIN 44 6 706 IPR040324 -
Lja4g0301 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 286 - -
Lja4g0301 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 431 - -
Lja4g0301 706 Gene3D - 487 699 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0301 Lja-Chr4 2428777 2433219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0301 357 551 Miscellaneous Gene Families AT5G08390 26.000 6.09e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0301 - - gmx:100788374 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0301 4 2428777 2433219 Lja4g0301 4 2428777 2433219 ECH
Lja4g0301 4 2428777 2433219 Lja1g4795 1 65085704 65089143 ECH