Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0298 ATGTTGGACGGGGGTGCGAAGTTCCCGGGAATAATAGATCTCAACAAACATGACAACAACTTTTATGATTTCTCGCAAGGCTTTTACCATAAGCTTGGGGAGGGGACCAACATGTCAATTGACAGCGTTGGGAGCTTGCAAACAAGTAATGGTGGAGGATCTGTTGCGATGTCTATTGATAATAGCAGTGTTGGTTCCAATGATTCCCATACTCGCATTTTGGAGCACCCAGGGCTGCGGAGGCGTGCTAATGATAACTACTCTGTTGCACATAGTGCCAATCGTCGGGGAAGAGTCACACATGCTTTGAGCGATGATGCCTTGGCTCAAGCTCTAATGGACAATAGCTCTCCGACTGAGGGGCTTGAAAATTTTGATGAGTGGACAATTGATTTAAGGAAGCTTAATATGGGTGAGGCTTTTGCCCAAGGAGCTTTTGGGAAACTCTACAGAGGCACTTACAATGGTGAAGATGTTGCTATCAAAATCTTGGAGAGGCCTGAAAATGATCCAGCAAAGGCTCAGTTGATGGAGCAACAGTTTCAGCAGGAGGTCATGATGCTGGCTACGCTAAAGCACCCTAACATAGTTCGTTTCATAGGTGCATGCCGTAAGCCAATGGTGTGGTGCATTGTGACAGAATATGCTAAAGGTGGTTCAGTTCGACAGTTTTTGACAAAGCGCCAAAACCGATCAGTTCCCCTCAAACTGGCTGTCAAGCAAGCCTTGGATGTTGCAAGAGGGATGGCATATGTTCATGGCCTTGGATTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAGTCAATTAAGATTGCTGACTTTGGAGTAGCTCGGATTGAGGTGCAAACTGAAGGGATGACACCTGAGACTGGAACATACCGTTGGATGGCCCCGGAGATGATCCAACATAGGCCTTACACACAAAAAGTGGATGTATATAGCTTTGGGATTGTTCTGTGGGAACTCATCACAGGTATGCTTCCATTTCAGAACATGACAGCCGTACAGGCAGCATTTGCAGTTGTCAACAGAAATGTTCGCCCAATCTTACCCAATGAGTGCTTACCTGTTCTCCGGGAGATCATGACAAGATGCTGGGATCCCAACCCTGATGTTAGGCCCCCATTCGTTGAAATTGTTGGAATGCTTGAGAATGCAGAAATGGAGATCATGACAACAGTTCGGAAGGCCCGGTTCAGGTGTTGCATGACTCATCCAATGACTGCTGACTGA 1251 0.462 MLDGGAKFPGIIDLNKHDNNFYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRILEHPGLRRRANDNYSVAHSANRRGRVTHALSDDALAQALMDNSSPTEGLENFDEWTIDLRKLNMGEAFAQGAFGKLYRGTYNGEDVAIKILERPENDPAKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLTKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNRNVRPILPNECLPVLREIMTRCWDPNPDVRPPFVEIVGMLENAEMEIMTTVRKARFRCCMTHPMTAD* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0298 416 Gene3D Phosphorylase Kinase; domain 1 124 217 - -
Lja4g0298 416 SMART serkin_6 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0298 416 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 5 407 - -
Lja4g0298 416 SUPERFAMILY Protein kinase-like (PK-like) 118 389 IPR011009 -
Lja4g0298 416 PRINTS Tyrosine kinase catalytic domain signature 316 338 IPR001245 GO:0004672|GO:0006468
Lja4g0298 416 PRINTS Tyrosine kinase catalytic domain signature 251 269 IPR001245 GO:0004672|GO:0006468
Lja4g0298 416 PRINTS Tyrosine kinase catalytic domain signature 360 382 IPR001245 GO:0004672|GO:0006468
Lja4g0298 416 PRINTS Tyrosine kinase catalytic domain signature 297 307 IPR001245 GO:0004672|GO:0006468
Lja4g0298 416 PRINTS Tyrosine kinase catalytic domain signature 213 226 IPR001245 GO:0004672|GO:0006468
Lja4g0298 416 Gene3D Transferase(Phosphotransferase) domain 1 218 411 - -
Lja4g0298 416 Pfam Protein tyrosine and serine/threonine kinase 136 388 IPR001245 GO:0004672|GO:0006468
Lja4g0298 416 PANTHER SERINE-THREONINE PROTEIN KINASE 5 407 - -
Lja4g0298 416 ProSiteProfiles Protein kinase domain profile. 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0298 416 CDD STKc_MAP3K-like 142 389 - -
Lja4g0298 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0298 Lja-Chr4 2403817 2408368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0298 24 416 MAP Kinase Kinase Kinase AT2G24360 80.407 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja4g0298 PK_Tyr_Ser-Thr 9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0298 - - gmx:100788536 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0298 4 2403817 2408368 Lja2g1848 2 19066454 19071386 PCT