Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0295 ATGGGGATTTGCTTCAGCATTGAAGAGCAAAACCGCCTCTCGGTCTCGGATTCAAATTCAAAGCCTAAATCTGCAGTAGGACATGAATCTGGTCGATCAACGCCAACTCCATTAGGCTCCATGAATATCAAGGAACTTCAACAAGGTGCTGGATACAGCAACGTTCACATTTTCACGTACGAGGAGTTGAGGCTCGCCACCAAGCACTTTCGTCCTGACTTGATTTTGGGTGAGGGTGGCTTTGGAGTTGTGTATAAAGGAGTCATAGATGATAGTGTCAGGTCTGGTTACAAATCCACTGAAGTCGCCATTAAGGAGCTTAATCGCGAAGGATTTCAAGGCGATCGGGAATGGCTCGCTGAAGTTAACTATTTAGGTCAATTCAGCAATCCAAATCTCGTGAAGCTTATTGGTTACTGCTGCGAGGATGAACACCGGCTATTGGTTTATGAATACATGGCGAGTGGGAGCCTGGAGAAGCATCTTTTCCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCGAAAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCCATCATATATCGTGACTTCAAGACATCGAACATCTTGCTAGATGCGGATTTCAATGCAAAACTTTCAGACTTTGGCCTTGCAAAGGATGGGCCGATGGGTGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCACCTGAATATGTTATGACTGGGCATTTGACAGCACGAAGTGATGTGTATGGTTTTGGGGTGGTGCTACTTGAAATGCTTATTGGTAGGAGAGCATTAGACAAGAGCAGGCCCAGCCGAGAGCATAACTTGGTTGAGTGGGCACGCCCACTGTTGAATCATAATAAAAAACTACTGAAAATTTTAGACCCAAAAATAGACGGGCAGTATTCAAGTAAAACTGCGATAAAGGTGGCACATTTAGCATACCTATGTCTTAGCCAAAACCCCAAAGGCAGACCTCTCATGAGCCAGGTTGTTGAAATTCTTGAAAACTTTCAAACAAAGGGAGAAAATGAGGAAGATCAAGTGTTTCAAAGTGGTGGTAGCAGTATAACCATTTATGAGGTACCAAAAGGCAGCAATGACAAACCAACTGAGGGGTGA 1158 0.4447 MGICFSIEEQNRLSVSDSNSKPKSAVGHESGRSTPTPLGSMNIKELQQGAGYSNVHIFTYEELRLATKHFRPDLILGEGGFGVVYKGVIDDSVRSGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSNPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAAKGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKIDGQYSSKTAIKVAHLAYLCLSQNPKGRPLMSQVVEILENFQTKGENEEDQVFQSGGSSITIYEVPKGSNDKPTEG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0295 385 CDD STKc_IRAK 76 350 - -
Lja4g0295 385 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Lja4g0295 385 Gene3D Transferase(Phosphotransferase) domain 1 153 370 - -
Lja4g0295 385 Gene3D Phosphorylase Kinase; domain 1 44 152 - -
Lja4g0295 385 Pfam Protein tyrosine and serine/threonine kinase 75 347 IPR001245 GO:0004672|GO:0006468
Lja4g0295 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Lja4g0295 385 MobiDBLite consensus disorder prediction 355 385 - -
Lja4g0295 385 SUPERFAMILY Protein kinase-like (PK-like) 51 348 IPR011009 -
Lja4g0295 385 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 29 381 - -
Lja4g0295 385 PANTHER OS01G0588500 PROTEIN-RELATED 29 381 - -
Lja4g0295 385 MobiDBLite consensus disorder prediction 356 374 - -
Lja4g0295 385 MobiDBLite consensus disorder prediction 14 39 - -
Lja4g0295 385 ProSiteProfiles Protein kinase domain profile. 70 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0295 Lja-Chr4 2335097 2338998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0295 4 347 Glycoside Hydrolase AT3G07070 44.633 4.14e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja4g0295 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0295 - - gmx:100800465 702.59