Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0292 ATGGCACTCAGTGATGATCTTAGGCGGCCTCGGTGCATCACATTATTCTTCATCTTCCTATCATGTCTTGTTCTTGTTGTTGCTTCTTCTTCTGACTCAGAAATTCTCCTCAAGGTGAAGAACAATCTGCAAAACAGCAACAGCAACAATGCATTGTTGTCTTCATGGAGCACCTCAACATCTCCCTGTTCAGGAGACAGAGCAAATTGGGAAGGGGTCCTCTGCTACCAAGGACAAGTCCACGGCTTGAAGCTTGAGAACATGGGGCTCAAAGGGGTCATTGATGTTGAATCCCTCAAGGAGTTACCTTATCTCAGAAGCATTAGTTTCATGAACAACAATTTTGATGGTCCTTGGCCTGAAGTGAACAAGATAACTGGGTTGAAGTCCCTTTACCTTTCAGATAACAAGTTCTCTGGGTTGATTCCTGATCAAGCTTTTGAGGGCATGCAATGGTTGAAGAAGATCCATCTGTCAAATAACCAGTTTGAGGGTCATATTCCGGCTTCGGTGGCGTTGTTGTCAAGGCTTCTGGAGTTGAGATTGGAGGGAAACAAATTCACTGGTGTCCTTCCTGAACTGCAGACATCCGAACTGAAATCATTTAGCGTAGCTAATAATCTGTTGCGGGGTGAAATACCATTTCACCTTAGAAAAATGTCGGCTTCTGCATTTTCTGCTAATGAAGGGCTATGTGGAGCCCCATTGGAAGAATGTCATTCCAAGAAGCCTTCATTTGTGAGTATTTTTGTGGTTGTGGTAGCTGTTGTTGTGGCAATGATTGTGATTGGAGCAGTAATACTCATGCTTAATAGAAGAAGAGAACGTGGACCAGCAAATTCAGTGGAAAATCCACCCCTCAAAAAGGGACGTGTGAAGGATTCAGCGGATGAAAGTCAGAGGTCATCTAGATCAATAAGCTCCATACGCAGCAGAAAAGATCACATGAAGTTATGTTTTGTGAGGGATGACAGAGAGAGATTTGATTTGCAAGAGTTGCTGAAAGCCTCAGCAGAGATTTTGGGAAGTGGTTGTTTCAGTTCTTCTTACAAGGCTTCTTTGCTGAATGGTCCCTCAATTGTGGTGAAGAGGTTCAAGCAAATGAACAATGTGGGCAAGGAAGAGTTTCAAGAGCACATGAGGAGGATAGGAAGGTTGAGTCATCCTAATCTGCTTCCTCTTGTGGCTTACTATTACAGAAAGGAGGAGAAGCTCTTGGTTACTGACTATATTCAGAATGGAAGCTTGGCTGTTCGCCTTCATGGACACCAAGCTCTTGGGGAACCAAGCCTAGATTGGCCAATGAGGTTAAAGATTGTGAAAGGCATAGCAACTGGTCTTGAATATCTATACAAGGACATGCCAAGCCTAATTGCAGCTCATGGAAATCTCAAATCCTCTAATGTTCTTCTGACTCAATCTTGTGAGCCCCTCCTCAGTGACTATGGATTGGTACCTGTGATTAACCAGGACCTAGCTCGGGACATCATGGTGGTGTACAAGTCACCAGAATATTTGCAGCATGGAAGAATCACAAAGAAGACTGATGTGTGGTGTCTTGGAATACTGATTCTGGAGATTCTAACAGGAAAGTTCCCTGCTACCTTTTTGCAACAGGGGAAAGGGAGTGAGGTGAGTTTGGCAAATTGGGTCCTCTCAGTTGTCCCAGAAGAGTGGAATAGTGCTGTGTTTGATAATGAAATGGGGGCAACCGAGAACAGTGAGGGAGAGATGGAGAAGCTTTTGAAGATTGCTTTGACTTGTTGTGAGGTAGATGTGGACAAGAGATGGGATTTGAAAGAAGCAGTAGAGAAAATCAGAGAGGTGAAGGAGAGGGATCATGATGATGATGGTGAGGATTCTAATGCTTCTTCTTCAAGTTGA 1884 0.439 MALSDDLRRPRCITLFFIFLSCLVLVVASSSDSEILLKVKNNLQNSNSNNALLSSWSTSTSPCSGDRANWEGVLCYQGQVHGLKLENMGLKGVIDVESLKELPYLRSISFMNNNFDGPWPEVNKITGLKSLYLSDNKFSGLIPDQAFEGMQWLKKIHLSNNQFEGHIPASVALLSRLLELRLEGNKFTGVLPELQTSELKSFSVANNLLRGEIPFHLRKMSASAFSANEGLCGAPLEECHSKKPSFVSIFVVVVAVVVAMIVIGAVILMLNRRRERGPANSVENPPLKKGRVKDSADESQRSSRSISSIRSRKDHMKLCFVRDDRERFDLQELLKASAEILGSGCFSSSYKASLLNGPSIVVKRFKQMNNVGKEEFQEHMRRIGRLSHPNLLPLVAYYYRKEEKLLVTDYIQNGSLAVRLHGHQALGEPSLDWPMRLKIVKGIATGLEYLYKDMPSLIAAHGNLKSSNVLLTQSCEPLLSDYGLVPVINQDLARDIMVVYKSPEYLQHGRITKKTDVWCLGILILEILTGKFPATFLQQGKGSEVSLANWVLSVVPEEWNSAVFDNEMGATENSEGEMEKLLKIALTCCEVDVDKRWDLKEAVEKIREVKERDHDDDGEDSNASSSS* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0292 627 Pfam Protein kinase domain 338 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0292 627 MobiDBLite consensus disorder prediction 277 310 - -
Lja4g0292 627 SUPERFAMILY Protein kinase-like (PK-like) 339 606 IPR011009 -
Lja4g0292 627 Pfam Leucine rich repeat N-terminal domain 30 75 IPR013210 -
Lja4g0292 627 Gene3D Ribonuclease Inhibitor 31 195 IPR032675 -
Lja4g0292 627 ProSiteProfiles Protein kinase domain profile. 335 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0292 627 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 620 - -
Lja4g0292 627 Gene3D Transferase(Phosphotransferase) domain 1 411 622 - -
Lja4g0292 627 PANTHER LRR RECEPTOR-LIKE KINASE 11 620 - -
Lja4g0292 627 Gene3D Ribonuclease Inhibitor 197 239 IPR032675 -
Lja4g0292 627 SUPERFAMILY L domain-like 61 220 - -
Lja4g0292 627 MobiDBLite consensus disorder prediction 608 627 - -
Lja4g0292 627 Gene3D Phosphorylase Kinase; domain 1 299 410 - -
Lja4g0292 627 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0292 Lja-Chr4 2281428 2284894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0292 11 617 Receptor kinase-like Gene Family AT5G35390 51.950 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja4g0292 Pkinase 3.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0292 - - gmx:100804368 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0292 4 2281428 2284894 Lja4g0292 4 2281428 2284894 ECH
Lja4g0292 4 2281428 2284894 Lja2g1856 2 19176967 19180417 PCT