Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0286 ATGGAAGGAGGTTATTACAGAACGCAGAGGGAGATGGGAGAAAACGGAGTGGTTGTTCCGTCGTGCTCTTTCGCCTCCCATGGCGGTAAAGGAAAAGGACCGTTGGGGAGGATCATTCAGCAGAGAGAGAAGGCTAACGTGCCTTCGTCGGCGAAGAAAAATCAAAAGCGGAAGTGTCTTCAGGATTTGGGTACCGTTCTGCGGAACGATGGACCTTCAATTGGTCGGGAATTTGATTATCTTCCTTCTGGACACAAAAGTTACAATTCTACTTGTCGAGAGGACCAACAGCCTGCCAAAAGGAGCAAGGTTTCAAAGGGTACTGGCAAAGGTCTGATGAATGCATCTGTGAAGAAACACGGTATTGGCAAAGGTCTGATGAATGCATCTGTGAAGAAACATGGTATTGGCAAAGGTCTGATGACAATTTGGAGGGCAACAAATCCTGATTCCGGAGAACTTCCCGTCGGTTTTGGTTTTGCTGACCGAGAAGTTCATCTAATCTCTAATTCTAAGAAATCTGTCCGTGAGAACAACAGGTCATCGAAAACAGCAACCATGAATAGAATGCTGAAAAATAAATTGCAGAATAAGAGAAATAATTTACAGGATAAGAGGAAACTTCTCATGCAAAGAAAAGCGGGGGAATCAAACCAACATGTGACTCGAAACCAGTCACTGAAGGAAAAATGTGAACTTTCTTTGGATAGTGAAATATCCGAGGAGGGTGTTGATCGAATATCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGAGAATTACAAGAACGAACCAATCTGCTTATTTGTTCAGACCATCTTGCTGCCAGTGGAATGCTTGGCTGCTCACTTGGTAAAGATGTGCTAGTTAAGTACCCCCCAGATACTGTTAAGATGAAGAAACCTATACATTTGCAACCTTGGGATTCCTCTCCAGAACTTGTGAAGAAATTATTCAAGGTTTTCCATTTCATTTATACATATGCTACAGTTGTTGATATTTGCCCCTTCACTCTTGATGAGTTTGTTCAGGCATTTCACGATAAGGATTCTATGTTACTTGGAAAGATTCATGTGGCCCTTCTTACACTTCTTCTCTCTGACATTGAAGTGGAGCTTTCTAATGGATTTGCACCTCATTTAGATAAGTCATGCAACTTTCTCGCCTTGCTTCACTCGGTTGAAAGTCAAGAATATTCCCCTGACTTTTGGAGAAGGTCTCTAAATTCTCTTACTTGGATTGAGATACTCCGTCAAGTGCTGGTTGCGTCTGGGTTTGGTTCGAAGCAAGGTGCCTTACGACGAGAGGCCCTTTCCAAGGAATTGAATCTTCTCATAAACTACGGCATATCCCCTGGTACCTTAAAGGGTGAGTTGTTTAAGATCTTGTCAGAGCGAGGCAACAATGGATGCAAAGTATCTGATCTGGCAAAAGCAACACAGATTGCTGAATTAAACCTTGCCAGCACAACAGAGGAACTGGAGTCTTTAATATGTTCCACACTTTCAAGTGATATTACGTTATTTGAAAAGATTTCATCATCTGCATATAGATTACGTATGAGCACAGTTACGAAGGACGACGATGAATGTCAGTCAGATATGGAGGACTATGGAAGTGTTGATGATGAACTTGATGACTCTGATACATGTAGCTGTGGTGATGATTTTGAAAGTGGTTCAGTAGACTCCAATATAAGAAAATTGAAGCGTGTAAAGAGTCACAAAACTAAAAGTGCTAAGCTGACAGTATTCAATGAAATCGATGAGAGCCATCCTGGAGAAGTGTGGTTGTTAGGACTGATGGAGAGTGAATATTCAGATTTGAACATTGAAGAAAAATTGAATGCACTGGCAGCTCTAACTGATCTTCTTTCATCTGGATCCAGCATCAGGATGAAGGATCCTGTAAAAGTTACAGCTGATTACGATTCTAGCATCCAATTACGTGGTTCTGGAGCAAAAATTAAGAGATCTGTAGTAAAGAAGCCTGTTCCATTTTGGAACCAGTTTGGGCAAATGCAACGTGTTAAAGAAGGGCACTTGAATTCTCATCCCTGTCCGGTAGATTCCTCATCATTAATGTCAAAATTCCGTAGTCATGAGCCATCTTTTGAGAAAGGAAAAGGTTCAACAGATTCACACCCCATTCAATCAGTGTATTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGCAGATGATCCTGGCCATAAGAGGGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCCTTGTGTACCTTGTTGTCGGTTCTCGATGATAGAGGGAAACGGGAGGCTCTTCTTATTGAATCTTTGGAGAGACGACAAACATCTCTATGTAGATTCATGTCCAGGGTTAAGGTTAACGGTATTGGAACAGGGTGTATGTCACATTCTGATCAATCTGAGCTGGATATGGTTACAGAAGACAGTAACTCTCCCGTATCTGATGTGGACAACCTGAACCTTTCTGACAGTGCTAAATCCTTGCCTTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGGGAGTGGAGGAACAAGTCCAAAAGTGGATCCGTGTTCAAGAATATGATTCTTGGATTTGGAATTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATCTGGATTCTCTAGCCAGATGTAAGAGTTGTCACGATTTATACTGGAGAGATGAGAGACACTGCAAAATTTGCCACATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCATATAGCCACGTGCAGGGAGAAAGAAAACAGCAAAACACATCCAAATCATAAAGTATTATCATCACAGATTCAATCGCTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCCGAAGATTCCTTGGTTGGTGCTTGGAGGAAGTCTGCTCATAAACTATGGGTCAAACGACTCAGACGCACCTCAACTTTAGTAGAGCTTGTGCAGGTTCTTACTGATTTTGTTGGTGCCATCAATGAGAGCTGGTTGTTTCAATGCAAATTTCCGGATGGTATGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCGCATACGTCATCTGCCCTTGCTCTGTGGTTGGTGAAATTAGATACAATAATTGCTCCCTACCTGGATAGAGTCTATCTTCAGAAGAAGCAAATAAATCACTGCGATATAGCAGCTGTCTTGTATTGA 3246 0.4156 MEGGYYRTQREMGENGVVVPSCSFASHGGKGKGPLGRIIQQREKANVPSSAKKNQKRKCLQDLGTVLRNDGPSIGREFDYLPSGHKSYNSTCREDQQPAKRSKVSKGTGKGLMNASVKKHGIGKGLMNASVKKHGIGKGLMTIWRATNPDSGELPVGFGFADREVHLISNSKKSVRENNRSSKTATMNRMLKNKLQNKRNNLQDKRKLLMQRKAGESNQHVTRNQSLKEKCELSLDSEISEEGVDRISMLIDDEELELRELQERTNLLICSDHLAASGMLGCSLGKDVLVKYPPDTVKMKKPIHLQPWDSSPELVKKLFKVFHFIYTYATVVDICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELSNGFAPHLDKSCNFLALLHSVESQEYSPDFWRRSLNSLTWIEILRQVLVASGFGSKQGALRREALSKELNLLINYGISPGTLKGELFKILSERGNNGCKVSDLAKATQIAELNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVTKDDDECQSDMEDYGSVDDELDDSDTCSCGDDFESGSVDSNIRKLKRVKSHKTKSAKLTVFNEIDESHPGEVWLLGLMESEYSDLNIEEKLNALAALTDLLSSGSSIRMKDPVKVTADYDSSIQLRGSGAKIKRSVVKKPVPFWNQFGQMQRVKEGHLNSHPCPVDSSSLMSKFRSHEPSFEKGKGSTDSHPIQSVYLGSDRRYNRYWLFLGPCNADDPGHKRVYFESSEDGHWEVIDTEEALCTLLSVLDDRGKREALLIESLERRQTSLCRFMSRVKVNGIGTGCMSHSDQSELDMVTEDSNSPVSDVDNLNLSDSAKSLPSAGAVVIEAGKGVEEQVQKWIRVQEYDSWIWNSFYLDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKENSKTHPNHKVLSSQIQSLKAAIYAIESVMPEDSLVGAWRKSAHKLWVKRLRRTSTLVELVQVLTDFVGAINESWLFQCKFPDGMVEEIIASFASMPHTSSALALWLVKLDTIIAPYLDRVYLQKKQINHCDIAAVLY* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0286 1081 Coils Coil 244 264 - -
Lja4g0286 1081 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 718 791 IPR028941 -
Lja4g0286 1081 Coils Coil 188 212 - -
Lja4g0286 1081 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 129 1070 IPR044977 GO:0006357
Lja4g0286 1081 SMART testlast3 312 371 IPR018501 -
Lja4g0286 1081 ProSiteProfiles DDT domain profile. 312 371 IPR018501 -
Lja4g0286 1081 PANTHER OS07G0619600 PROTEIN 129 1070 - -
Lja4g0286 1081 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 593 632 IPR028942 -
Lja4g0286 1081 PANTHER OS07G0619600 PROTEIN 40 128 - -
Lja4g0286 1081 Pfam DDT domain 313 368 IPR018501 -
Lja4g0286 1081 MobiDBLite consensus disorder prediction 87 115 - -
Lja4g0286 1081 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 40 128 IPR044977 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0286 Lja-Chr4 2239557 2248369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0286 210 633 Homeobox Transcription Factor Family AT5G44180 28.942 1.82e-46 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lja4g0286 WSD 4.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0286 - - lja:Lj4g3v3015070.1 1880.92