Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0284 ATGGCTGTATCACTATCTTCCCCATTCCACTGCTCTCCCACCACCAACACTCTCCGTCTCCGATCACCGCCAAAACCCACTTTCGTCACTCTCCGCCGCACTTGCGTGGCGGCGACCGCTGCCACTGACACTTCACAGAGTCCTCTGCTCCAAGTCAATGATCTCAAGGCTAAGATCGTTCACGCTCTCATGGGAGCAAACGGTTCTGGAAAGAGCACTTTTGCCAAGGTTCTTGTTGGGCACCCGGATTATGAGGTCACCGGAGGTAGAGCTGTGTACAAAGGGGAGAATCTGCTTGACATGGAACCGGTGGATAGGTCACTTGCTGGTATTTTCATGAGTTTCCAGTCCCCTGTTGAGATTCCTGGTGTTAGTAATTATGATTTTCTCCTAATGGCTTACAATGCTAGAAGGAAAAAATCTGGCCTCCCTGAGCTTGGAGCAATTGAGTTCTTGACTCATTTCATGGAGAAAACCAAACTTGTTAACATGAAGGAAGGATTCCAAAATAGGAATGTCAATGAAGGATTTAGTGGTGGTGAAAAGAAACGCAATGAAATTTTGCAGCTCGCGGTTTTTGGTGCAGACTTGATTATTCTGGATGAAATTGATTCTGGATTGGATGTGGATGCGCTCAGGGATGTGACGAATGCAGTTAAACAGATTCTGACCAAAGATACTTCTCTATTGATCATAACTCATTATCGACGAGTCCTGGATCTATTGAATCCTGAAAGGGTCCATGTTTTGGAGGAAGGGAAAATTACAAGGAGTGGCGGCATGGAGATCGTAGAATCTATTGAAGCAGATGGATTTGGAAAAGTCACCGCTAGAACTTAA 840 0.4571 MAVSLSSPFHCSPTTNTLRLRSPPKPTFVTLRRTCVAATAATDTSQSPLLQVNDLKAKIVHALMGANGSGKSTFAKVLVGHPDYEVTGGRAVYKGENLLDMEPVDRSLAGIFMSFQSPVEIPGVSNYDFLLMAYNARRKKSGLPELGAIEFLTHFMEKTKLVNMKEGFQNRNVNEGFSGGEKKRNEILQLAVFGADLIILDEIDSGLDVDALRDVTNAVKQILTKDTSLLIITHYRRVLDLLNPERVHVLEEGKITRSGGMEIVESIEADGFGKVTART* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0284 279 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 54 277 IPR010230 GO:0005524
Lja4g0284 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 261 IPR027417 -
Lja4g0284 279 Gene3D - 53 275 IPR027417 -
Lja4g0284 279 CDD ABC_FeS_Assembly 50 272 IPR010230 GO:0005524
Lja4g0284 279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 277 IPR003439 GO:0005524
Lja4g0284 279 TIGRFAM sufC: FeS assembly ATPase SufC 55 274 IPR010230 GO:0005524
Lja4g0284 279 SMART AAA_5 57 245 IPR003593 -
Lja4g0284 279 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524
Lja4g0284 279 MobiDBLite consensus disorder prediction 1 23 - -
Lja4g0284 279 Pfam ABC transporter 55 202 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0284 Lja-Chr4 2233110 2235792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0284 62 259 Calmodulin-binding Proteins AT2G36910 24.631 4.27e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0284 K09013 - gmx:100811883 360.147