Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0280 ATGGCCGGTGCGATGAAGAAGGTCGACAAGATTCGCCAAATCGTGCGTCTCAAACAGGTCATGATGCGGTGGAAGCAAATCAGCCTCCGCCGCCACGACTCATCGGACCCACGCCCACCCTCCGGCTGCCTCTACGTCTACGTCGGCCACGAACGCCAGCGTTTCGCCATCCCCGCGCGGTTCCTCAACCTCCCCGTCTTCGCCGGCCTCCTCGACGAAACCGAGGAGGAGTTCGGTCTCCGAGGCAGCGGCGGCCTCATCCTCCCCTGCGATGTGTGCTTCTTCACGCACATCGTCAAGCGCCTCCACAAGAACGAGAACAAGTACGGGAAGCTCACACTGGAACAGTTTGTCATCACGTTTTCCGATGCGGCGGCGAATTTTGATTCTTGCAAGGACCAAAACGTCGTCGTTTTTACTCCTCTGTTGCAGAAAGCAGAGGTCTAG 447 0.5839 MAGAMKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRPPSGCLYVYVGHERQRFAIPARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVKRLHKNENKYGKLTLEQFVITFSDAAANFDSCKDQNVVVFTPLLQKAEV* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0280 148 Pfam Auxin responsive protein 16 102 IPR003676 GO:0009733
Lja4g0280 148 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 137 IPR003676 GO:0009733
Lja4g0280 148 PANTHER - 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0280 Lja-Chr4 2203421 2204076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0280 5 99 Calmodulin-binding Proteins AT4G34750 37.113 1.65e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0280 K14488 - gmx:100793118 195.282