Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0272 ATGGGCAGGAAGTGCTCACATTGTGGAAACATTGGTCACAATTCTAGGACCTGCACATTTTCCAGAGGCGTTGGACTTCGCCTCTTTGGCGTGCAACTAGATATTTCTTCTTCATCACCTTCTCATCATTTTACCATCAAGAAAAGCGTTAGCATAGACTCCTTTCCCTCACCATCCTCTCCATCTTCCTCGTTTTCTTCATCAAGAATAGCCATTTTTGATGATAGAACCTCTATTGGCTATCTATCAGATGGTCTTATAGGTCGACCCCAAGACAGGAAAAAAGGAGTTCCCTGGACAGAGGAGGAGCACAGAATATTCCTTGTTGGACTTGAGAAGCTGGGAAAAGGTGACTGGAGAGGAATCTCTAAAAACTTTGTGACTACAAGAACCCCAACACAAGTGGCCAGCCATGCTCAGAAGTACTTTCTTCGATTGGCAACTATAGCTAACAAGAAGCGACGTTCAAGCCTCTTTGACTTGGTTGATAGCAGCAACACCAAGATAGAAGGTTATCAGAAGGATAAGGGGTCTAAATGTGAAGTTGGGAATGATGCCACTTTGTCATTGATAACTAATTACTTTCAACAAGAAAAAACCAAATCAGATAAGCAAGAAACTTGTGATGATGATCACACATCTGAAATTGAACCATCTGGTGCAGAACATGAAGCTGTGCCTATCTGGCTACATTCTTCAAATGTGGCAGTACAGAGTTCCCAAAATGCAACAGCACCTGACCTGGAGCTTACTCTTGCAGCACCTAAGGTTATGATGCTGGAACAAAATGAATCATCCCCTGCAGCTCAATTCCTGCTTGGACCAATTACCGTGACTTAA 840 0.4298 MGRKCSHCGNIGHNSRTCTFSRGVGLRLFGVQLDISSSSPSHHFTIKKSVSIDSFPSPSSPSSSFSSSRIAIFDDRTSIGYLSDGLIGRPQDRKKGVPWTEEEHRIFLVGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKYFLRLATIANKKRRSSLFDLVDSSNTKIEGYQKDKGSKCEVGNDATLSLITNYFQQEKTKSDKQETCDDDHTSEIEPSGAEHEAVPIWLHSSNVAVQSSQNATAPDLELTLAAPKVMMLEQNESSPAAQFLLGPITVT* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0272 279 PANTHER TRANSCRIPTION FACTOR KUA1 1 279 - -
Lja4g0272 279 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Lja4g0272 279 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Lja4g0272 279 MobiDBLite consensus disorder prediction 201 219 - -
Lja4g0272 279 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Lja4g0272 279 MobiDBLite consensus disorder prediction 201 221 - -
Lja4g0272 279 Gene3D - 97 149 - -
Lja4g0272 279 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 279 - -
Lja4g0272 279 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Lja4g0272 279 CDD SANT 98 143 IPR001005 -
Lja4g0272 279 SMART sant 95 145 IPR001005 -
Lja4g0272 279 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Lja4g0272 279 SUPERFAMILY Homeodomain-like 93 147 IPR009057 -
Lja4g0272 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0272 Lja-Chr4 2137554 2139236 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja4g0272 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0272 - - gmx:778052 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0272 4 2137554 2139236 Lja4g0272 4 2137554 2139236 ECH