Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0271 ATGACCAGCCTCAAAGATTGCTATGAAGGAGAGATGGGTTCTTCAGAGGTTTCAGGGAAAGTGGTGGTGGTTGCAGTTAAAGCTTCCAGAGATATTTCAAAGACAGCTTTGGTGTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGTTACTTGTTGTCATTCCAGCTACGTCCTCAGGCAGGAAGGTATGGAGTCTTTCAAGATATACTACTGATTGTGCCACTAGTCATTGGGCATCTCGTTTAGGAACTGCTTCAGATCAGAAAGAAGTTATCACAAATTCTTGTTCTCAATTAGTGCTTCAACTCCATGACTTCTACGATCCAGATAAGATAAAGATCAGAGTGAAGATTCTTTCTGGCTCTTCATGCGGAGCAGTCGCTGCTGAGGCCAAGAGAGTTCAGTCAAGCTGGATTATATTGGACAGAAAAGTGAAGCATGAAAAGAAATACTGCATGGAGGAGCTGCATTGCAACATTGTTGTTATGAAGCGGTCTCACCCGAAGATTCTACGCTTGAATTTGAATAGTTTTCCAAAGATTGATCTCAACAGGGACTGTCCATTGTCTCTGGAGCCTAATTCATATACAAGAAACTTAAAAGAAAAATCTGAACATCGAGATAGAATTAAAGGTCCAGCTGTTACTCCTGCTAGCAGTCCAGAGTCAGGGTCACCGCCATTGACTGCTACTGATGTTGGAACATCGTCGATATCAAGCTCAGATCCTTGGACTTCCCCATTTTTCCACTCTGATAACTATGAAAGACGAATGAGAAGTTTTCCCTTTGTTCACGAGGGTCTGACAAACCTTGAGGTTGAATCCGACTCAGAGAGTGAAAAGCTAAGTTTATCATCAAAAAGTTCATACTTTCAGCCATGGATAGAAAATGTAATTTGTGCAGATGGTGAGTTACATGAGGAGAGTATACAAAGTTCAAGTGACAAGGCTTTGATTTCTACCTATGAAGCTTTGCTTCAGAGATTCACAACAAAATTGGATCAAGATCCCATTTTAGGAGCGCTTAATTGTAAAATTGATATGAACTTTAGCAAAAGTGTTAGAGAAGCAATTTCACTAGCCAAAAGTGCAGCTCCTGGATCACCCCCATTATGCTCTATTTGCCAGCACAAGGCGCCTGTATTTGGGAATCCTCCAAGGTGGTTTACATTTGCTGAGTTGCAACTTGCCACAAGTGGTTTTTCACAAGAAAACTTCTTGGCTGAAGGTGGTTTTGGTTCTGTACACCGCGGTGTCCTACCTGATGGACAGATCATTGCCGTCAAGCAGTATAAATTAGCAAGTACTCAAGGAGATAAAGAGTTTTGCTCAGAAGTTGAGGTCTTGAGCTGTGCACAGCATCGTAATGTTGTGATGCTAATTGGGTTTTGTGTGGAGGATGGAAGAAGATTGCTAGTTTATGAATATCTCTGCAATGGATCTCTGGATTCCCATCTCTATGGACGAATGCCGAATGTACTGAAATGGTCTGCAAGGCAAAAAATTGCAGTTGGAGCGGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGCATTGTGCATCGTGATTTGCGGCCTAATAATATCCTCCTCACTCATGATTTCGAAGCATTAGTGGGAGATTTTGGACTTGCTAGGTGGCAGCCAGATGGAGATATAGGTGTAGAAACAAGGGTGATAGGAACATTTGGGTATTTGGCACCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGATGTGTACTCATTTGGGATAGTGCTGCTGGAGCTTGTGACCGGACGAAAAGCCGTGGATATTAACCGGCCCAGGGGCCAGCAATGCCTCAGTGAATGGGCACGCCCGTTGCTTGAAGAACATGCCATTCATAAACTATTAGATCCGAGCATAAAGAACTGCTATGTTGATCAAGAGGCTTATCGCATGCTGCAATGCTCCTCTTTGTGCATCCGACGAGATCCACATATAAGGCCCCGAATGTCTCAGGTGCTCAAGATGCTGGAAGGTGACATTCTCATGTGA 2043 0.4312 MTSLKDCYEGEMGSSEVSGKVVVVAVKASRDISKTALVWALTHVVQPGDCIKLLVVIPATSSGRKVWSLSRYTTDCATSHWASRLGTASDQKEVITNSCSQLVLQLHDFYDPDKIKIRVKILSGSSCGAVAAEAKRVQSSWIILDRKVKHEKKYCMEELHCNIVVMKRSHPKILRLNLNSFPKIDLNRDCPLSLEPNSYTRNLKEKSEHRDRIKGPAVTPASSPESGSPPLTATDVGTSSISSSDPWTSPFFHSDNYERRMRSFPFVHEGLTNLEVESDSESEKLSLSSKSSYFQPWIENVICADGELHEESIQSSSDKALISTYEALLQRFTTKLDQDPILGALNCKIDMNFSKSVREAISLAKSAAPGSPPLCSICQHKAPVFGNPPRWFTFAELQLATSGFSQENFLAEGGFGSVHRGVLPDGQIIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYLCNGSLDSHLYGRMPNVLKWSARQKIAVGAARGLRYLHEECRVGCIVHRDLRPNNILLTHDFEALVGDFGLARWQPDGDIGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDINRPRGQQCLSEWARPLLEEHAIHKLLDPSIKNCYVDQEAYRMLQCSSLCIRRDPHIRPRMSQVLKMLEGDILM* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0271 680 MobiDBLite consensus disorder prediction 197 245 - -
Lja4g0271 680 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0271 680 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Lja4g0271 680 MobiDBLite consensus disorder prediction 221 245 - -
Lja4g0271 680 SUPERFAMILY Protein kinase-like (PK-like) 384 675 IPR011009 -
Lja4g0271 680 Gene3D Transferase(Phosphotransferase) domain 1 480 678 - -
Lja4g0271 680 CDD STKc_IRAK 410 676 - -
Lja4g0271 680 Pfam Protein tyrosine and serine/threonine kinase 407 674 IPR001245 GO:0004672|GO:0006468
Lja4g0271 680 PANTHER OS01G0253100 PROTEIN 17 680 IPR045271 GO:0004714|GO:0006468
Lja4g0271 680 SMART tyrkin_6 404 674 IPR020635 GO:0004713|GO:0006468
Lja4g0271 680 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Lja4g0271 680 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 17 680 - -
Lja4g0271 680 MobiDBLite consensus disorder prediction 201 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0271 Lja-Chr4 2123031 2127886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0271 365 670 Trihelix Transcription Factor Family AT1G68690 51.282 8.01e-101 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lja4g0271 PK_Tyr_Ser-Thr 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0271 - - aprc:113855006 1167.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0271 4 2123031 2127886 Lja4g0271 4 2123031 2127886 ECH