Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0262 ATGGGGAGGAGGATTCTGAACGATGCATTGAGGTCGATGGTCAATGCCGAGCGGAGAGGCAAAGCTGCGGTGGAGCTCAAGCCCATCTCCACCGTCATCTCTTCTTTTCTCCAAATCATGAAAAACCGTGGTTATGTCAAGAATTTTGAAGTCTATGATCCGCATAGAGTCGGGAGGATAACGGTTGAGCTACAAGGTAGGATTAATGACTGCAAGGCCCTCACATACAGACAAGACCTCAAGGCAAGGGATATTGAAGCTTACAGATTGAAAACTCTTCCAACTAATCAGTGGGGTTATGTTGTGATTTCGACACCAGATGGTGTTTTGGATCATGAAGAGGCGATTAGGAAGAATGTGGGCGGTCAGGTTCTTGGTTACTTTCATTAA 390 0.459 MGRRILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVELQGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQVLGYFH* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0262 129 SUPERFAMILY Ribosomal protein S8 3 129 IPR035987 GO:0003735|GO:0005840|GO:0006412
Lja4g0262 129 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 129 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lja4g0262 129 Gene3D - 69 129 - -
Lja4g0262 129 Gene3D - 2 68 - -
Lja4g0262 129 PANTHER 40S RIBOSOMAL PROTEIN S15A-5 1 129 - -
Lja4g0262 129 ProSitePatterns Ribosomal protein S8 signature. 99 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lja4g0262 129 Pfam Ribosomal protein S8 6 127 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0262 Lja-Chr4 2043697 2044852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0262 1 129 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 79.845 3.03e-80 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0262 K02957 - gmx:100792186 238.424