Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0253 ATGATGCTCCGTGCAAATCCAACCGTACACGTGCCACCGTGGCCGATGGTGAATGATCCAACGACGGAGATCTTTTCTCCGTTAACCGCCACCAATGCCGATTACGATCACTCTCCGTTTTACTTGCAGGAAGCGCTTGAGCAATACGCTCCCTCCGACGCCGATTCTGACCCGGGTCGTGACTCGGCGGATGTGTACTCATTCGACCAGTTCCGCATGTTCGAGTTCAAGGTCCGGAACTGCGCACGTGGCAGGTCACATGACTGGACAGAGTGCCCCTACGCTCATCCCGGCGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTACCACTACTCCGGCGCGTCGTGTGCTGATTTCCATAAGGGGAGTTGCATGAAAGGGGACGCGTGTGAGTTCGCGCATGGAGTGTTCGAGTGCTGGCTCCACCCTGCGCGCTACCGGACTCAGCCATGCAAGGATGGTACCAGTTGCCGGCGGAGGGTGTGTTTCTTTGCTCACACGCCGGAGCAACTCAGGGTGCTTCCTCAGCATAGTCCCCGCCCCCGGAGCGTTGCGTTTGAGTTTCAATCTGCATGTGCCAAGAAGCTTCCGGCTTCTTCTTCTTCTTCTCATGGTTCGGTTTCCCCGCCGGCGGAGACTGCAACTCCTCCGATGTCGCCGGTGGCTCAGTCGTTATGCTCGAGCTCCGTTGGTGTCAGTGAAATGGTGGCGTCTCTGTGTAATTTGCAACTGGGTAGGGTGAAGTCGTTGCCTTCTTCATGGAACATGCAAATGGGGTCTCCACGTTTCGGATCTCCTAGAGGACCCGTGATCCGACCCGGATTCTGCAGCCTCCCGTCGACCCCGACGCAGGTGCCACCGGGTCGTGGCAGTGTGAACTACTTTGATCTGTGGGATCAGAGGTGTGAGGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCTGGAAGGGGCATAAGAGCGAAGATGTTTGAGAAACTGAGCAAAGAGAACTCTTTGGACAGTTCGGGTTCGGGTCAGGAAGATGGGGCTCCGAATGTTGGGTGA 1044 0.5738 MMLRANPTVHVPPWPMVNDPTTEIFSPLTATNADYDHSPFYLQEALEQYAPSDADSDPGRDSADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHSPRPRSVAFEFQSACAKKLPASSSSSHGSVSPPAETATPPMSPVAQSLCSSSVGVSEMVASLCNLQLGRVKSLPSSWNMQMGSPRFGSPRGPVIRPGFCSLPSTPTQVPPGRGSVNYFDLWDQRCEEEEPVMERVESGRGIRAKMFEKLSKENSLDSSGSGQEDGAPNVG* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0253 347 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Lja4g0253 347 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Lja4g0253 347 ProSiteProfiles Zinc finger C3H1-type profile. 111 137 IPR000571 GO:0046872
Lja4g0253 347 MobiDBLite consensus disorder prediction 197 220 - -
Lja4g0253 347 MobiDBLite consensus disorder prediction 327 347 - -
Lja4g0253 347 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 5 347 - -
Lja4g0253 347 PANTHER UNKEMPT FAMILY MEMBER 5 347 IPR045234 -
Lja4g0253 347 Gene3D - 111 174 - -
Lja4g0253 347 MobiDBLite consensus disorder prediction 329 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0253 Lja-Chr4 1977676 1979260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0253 65 249 C2H2 Transcription Factor Family AT5G12850 51.795 3.65e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g0253 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0253 - - aprc:113867365 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0253 4 1977676 1979260 Lja4g0253 4 1977676 1979260 ECH