Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0244 ATGAATAACATGAGCAACTTGAGTTCTTTCAGCAGCTCTGGTCTCATAGATTCCAGGCTTGAAGAGCATCAATTGTGTAGATCTAAACAGTGCCCTAGTTGTGGACACAAGTTTGAAGGGAAGCCGGATTGGCTTGGTCTACCAGCAGGAGTTAAGTTTGATCCAACAGACCAAGAACTCATGGAACATCTTGAAGCCAAGGGAAAGGATATGAAATCACACCCTTTGATTGATGAGTTCATTCTCACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAAAAAATTCCAGGAGTATCAAGAGATGGGTTGAGTAGACACTTCTTCCACAGACCATCAAAGGCATACACAACAGGTACAAGAAAAAGGAGAAAGATTCAAACTGAATGTGATCACTTGCAACAAGGAGGAGAAACCCGTTGGCACAAAACTGGGAAAACAAGACCAGTGATTGTGAATGGAAAACAAAAAGGGTGCAAGAAAATTCTAGTCCTGTATACCAATTTTGGGAAGAACAGAAAACCAGAAAAGACAAACTGGGTGATGCACCAGTACCATCTGGGACAGAATGAAGAAGAGAAAGAAGGGGAACTTGTGGTGTCAAAGATATTTTATCAGACACAGCCAAGGCAGTGTAATTGGTCTGAGAAAAGTGCAGCAACAACAACAACAACAACAAATGGTGAAGGAAGTGGAGACCCTAACTACAGTGGAAGTGGTAGTTGCTCTTCTAAGGAAGTGGTTACTCAAAGAGATGAGATGTCTGCTGCTGTTGTTGGGGTTACTCCAATGACAAGCTTCACCACTGCTTTGGATATTCAGCACCTAAAATCTGACCATTTAAGCTTCTTCCCATTCAGAAAAAGCTTGCATGAGGTTGGAATAGGAGAAGCTTCGAGGACATCAAGAGAAGTTCAAGCATCAGGCTCATGCGAGGAAGAAGTACATGAACAACGGCATGTAGCACATCATGATCATCATCAACAACAACAACAACAACAGATTGCAACGACATCGTTCCACATGATCAGTAGGCCTTCGCATCCCATCTCCACAATCATCTCTCCACCACCTCTCAACCACACATCCATCAATATCCTAGACGACAATTCTTACCAAGTCTCCACAACAACAATGATGCTCCAAAATGATAATTTTCAGCAACATGATGATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATTATGGGGTGCACTTCAACTCTTACCAAACAGTCACAGGAGTCATCCATGGCAAACCCACAAGAAGCTGAGTGGTTGAAGTACTCTTCTTACTGGCCACACCCTGACCATCATTGA 1335 0.43 MNNMSNLSSFSSSGLIDSRLEEHQLCRSKQCPSCGHKFEGKPDWLGLPAGVKFDPTDQELMEHLEAKGKDMKSHPLIDEFILTIEGEDGICYTHPEKIPGVSRDGLSRHFFHRPSKAYTTGTRKRRKIQTECDHLQQGGETRWHKTGKTRPVIVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQNEEEKEGELVVSKIFYQTQPRQCNWSEKSAATTTTTTNGEGSGDPNYSGSGSCSSKEVVTQRDEMSAAVVGVTPMTSFTTALDIQHLKSDHLSFFPFRKSLHEVGIGEASRTSREVQASGSCEEEVHEQRHVAHHDHHQQQQQQQIATTSFHMISRPSHPISTIISPPPLNHTSINILDDNSYQVSTTTMMLQNDNFQQHDDKLGGRSASGLEELIMGCTSTLTKQSQESSMANPQEAEWLKYSSYWPHPDHH* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0244 444 MobiDBLite consensus disorder prediction 216 250 - -
Lja4g0244 444 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Lja4g0244 444 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 425 - -
Lja4g0244 444 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Lja4g0244 444 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 425 IPR044799 GO:0003700
Lja4g0244 444 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Lja4g0244 444 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0244 Lja-Chr4 1897887 1902589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0244 11 438 NAC Transcription Factor Family AT5G56620 52.009 2.05e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g0244 NAM 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0244 - - gmx:100791884 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0244 4 1897887 1902589 Lja4g0244 4 1897887 1902589 ECH