Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0241 ATGGACAAGACCTTTACTCTGATTTTTCTCCTCTTCCTCTTCCTCTTCCTCCACCTTCCAAATGCAGCAAAATCTGCCATTGGTGTTGGTATTGGAGTTGGTGGTGGTGGGGTTAGTATTGGTGTAGGTGCTGGGAATGGCAATGATGGTAATAATGGTGGATCTTCAGTGCCAAACCAGAACAATGCTTACACAGCTCTTCAGGCATGGAAATCAGCAATCACTGATGACCCACTGAAGATTCTAGACACTTGGGTTGGTCCCAATGTGTGTTCTTACAAAGGAGTGTTTTGTGAAAATTCCCAAGATGGAATTGCTGAATCATTTGCAACTACTGGTCCTGTTGTTGCAGGAATAGATCTCAACCATGCAAATCTCCTAGGAACTTTTGTCAAAGAGCTTTCTTCACTATCTGAAATAACTCTTCTCCACCTCAACAGTAACAGATTTTCAGGTACAGTTCCTGATTCACTCAGAGAGCTCACTTCCTTAGAAGAATTGGACCTCAGCAACAACCAATTTTCAGGTCCTTTTCCCAATGTTGTTCTATACATGCCAAGTATTATCTACTTGGACCTCAGGTTCAACTCCTTCTCAGGTTCCATTCCTGAAGCATTGTTTAACAAGAGACTTGATGCAATTTTTCTCAACAACAACCAATTTGGAGGTGAAATTCCACAGAATTTGGGAAACTCCCCTGCCTCTGTGATCAACTTAGCTAACAACAAGTTGAGTGGAGAAATCCCAGTGAGTTTTGGGTTCATGAGTCCAAAGTTGAAGGAGATTCTCTTCCTGAATAACCAGTTAACAGGTTGCATTCCTCAAGGAGTTGGAATCTTCACTGAGATGGAAGTTCTTGATGTGAGCTTCAACTCACTGGTTGGTCATTTGCCAGACACAATCTCCTGCTTGCAAGAGATTGAGGTGCTGAATTTGGAGCATAACAAGCTATCTGGGGAGTTATCTGATGTGGTTTGTTCTTTGAGGAGCTTAATGAATCTAACTGTTGCTTATAACTTTTTTTCTGGGATTAGTCAGCAATGTTCAAGGCTTTTCAATGTGGGGTTTGATTTCTCAGATAACTGCATTCCTGGAAGGAACATGCAGAGACCTCCACCAGAGTGTTCTGTGATCCCAGGTGGTAGTTTGAACTGTCTGAGAATTCCAACTCCAAAACCTCTTGTTTGTGGTTCTCTGGCTTCAAATCTGCGTTCATCATTTCCTTGA 1227 0.4222 MDKTFTLIFLLFLFLFLHLPNAAKSAIGVGIGVGGGGVSIGVGAGNGNDGNNGGSSVPNQNNAYTALQAWKSAITDDPLKILDTWVGPNVCSYKGVFCENSQDGIAESFATTGPVVAGIDLNHANLLGTFVKELSSLSEITLLHLNSNRFSGTVPDSLRELTSLEELDLSNNQFSGPFPNVVLYMPSIIYLDLRFNSFSGSIPEALFNKRLDAIFLNNNQFGGEIPQNLGNSPASVINLANNKLSGEIPVSFGFMSPKLKEILFLNNQLTGCIPQGVGIFTEMEVLDVSFNSLVGHLPDTISCLQEIEVLNLEHNKLSGELSDVVCSLRSLMNLTVAYNFFSGISQQCSRLFNVGFDFSDNCIPGRNMQRPPPECSVIPGGSLNCLRIPTPKPLVCGSLASNLRSSFP* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0241 408 PRINTS Leucine-rich repeat signature 304 317 - -
Lja4g0241 408 PRINTS Leucine-rich repeat signature 164 177 - -
Lja4g0241 408 Gene3D Ribonuclease Inhibitor 60 236 IPR032675 -
Lja4g0241 408 Gene3D Ribonuclease Inhibitor 237 386 IPR032675 -
Lja4g0241 408 PANTHER LRR/EXTENSIN 8 401 - -
Lja4g0241 408 Pfam Leucine Rich Repeat 163 180 IPR001611 GO:0005515
Lja4g0241 408 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 8 401 - -
Lja4g0241 408 SUPERFAMILY L domain-like 64 353 - -
Lja4g0241 408 Pfam Leucine rich repeat N-terminal domain 61 98 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0241 Lja-Chr4 1881740 1882966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0241 58 387 Leucine-rich Repeat extension Gene Families AT3G24480 48.512 3.68e-101 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0241 - - gmx:100786358 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0241 4 1881740 1882966 Lja4g0241 4 1881740 1882966 ECH