Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0233 ATGTTAAACTTGCATTCCATTTTCTATGCTTTGGTTGTTCTTCTCCTTCTTCTGCAGAATCCCAATACAGCATGGTGCCATACCAAGGGAATTCAAACAAGGCATTTTTCAGGGAAAGGATTATTATCCACCAACATGACCCGGGTCCAAGATTCAGAACAACAGTTCATGAAATGGGTGAAATTTGTTGGTGGTCTTAAACACTCTGTTTTCAGGACAGCCAAAAACAAGCTTTTTCCTTCTCACACTCTGCACGTTTCTAAGAATCATGGTAAAGGAGGATTTTCATCAATTCAAGCAGCCATTGATTCTCTTCCCTTCATCAATATTGTGAGAGTGGTCATTAAGGTCCATGCAGGGGTTTACACGGAAAAAGTTAACATTCCTCCTTTGAAATCCTTCATAACCATACAAGGAGCAGGTGCAGATAAAACCATAGTTCAATGGGGTGACACTGCACAAACACCTGGAGGGCCAAAAGGCCAGGCACTAGGAACATATGGTTCTGCAACTTTTGCAGTGAACTCACAATATTTCATTGCCAAGAACATCACATTCAAAAACACTACCCCAGTTCCAGCACCAGGAGCAGTTGGAAAACAAGCAGTGGCATTGAGAATTTCAGCAGACAATGCAGGTTTCTTAGGCTGCAAATTCTTGGGAGCACAGGACACACTCTATGACCAAGTGGGTAGGCATTACTATAAGGATTGCTACATTGAAGGCTCTGTTGATTTCATTTTTGGAAATGCTCTCTCTCTGTTTGAGGGGTGTCACGTGCATGCGATAGCACAGAAAGCAGGGGCCCTAACAGCTCAAGGAAGGAACAGTCTATTAGAAGACACGGGTTTCTCGTTTGTTCACTGCAAGGTCACGGGCTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCCTTCTCTCGTGTTGTCTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGCTGGTATAATTGGGGTGATCCCAACCGTGAAATGACTGTATTCTATGGACAGTACAAGTGCTCTGGACCAGGAGCAAGCTTTGCCGGAAGAGTATCATGGTCGAGGGAGCTCACTGATGAGGAAGCTAAGCCATTTATTTCACTCAGCTACATAGATGGCTCTGAATGGATCAATTCTTTCTTCTGA 1158 0.4404 MLNLHSIFYALVVLLLLLQNPNTAWCHTKGIQTRHFSGKGLLSTNMTRVQDSEQQFMKWVKFVGGLKHSVFRTAKNKLFPSHTLHVSKNHGKGGFSSIQAAIDSLPFINIVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADKTIVQWGDTAQTPGGPKGQALGTYGSATFAVNSQYFIAKNITFKNTTPVPAPGAVGKQAVALRISADNAGFLGCKFLGAQDTLYDQVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQKAGALTAQGRNSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCSGPGASFAGRVSWSRELTDEEAKPFISLSYIDGSEWINSFF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0233 385 PANTHER PECTINESTERASE 2 384 - -
Lja4g0233 385 Pfam Pectinesterase 89 377 IPR000070 GO:0030599|GO:0042545
Lja4g0233 385 SUPERFAMILY Pectin lyase-like 80 383 IPR011050 -
Lja4g0233 385 ProSitePatterns Pectinesterase signature 2. 240 249 IPR033131 -
Lja4g0233 385 Gene3D - 81 384 IPR012334 -
Lja4g0233 385 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0233 Lja-Chr4 1843867 1847942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0233 41 381 Carbohydrate Esterase AT5G47500 45.614 1.13e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0233 K01051 - gmx:100802832 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0233 4 1843867 1847942 Lja4g0233 4 1843867 1847942 ECH