Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0232 ATGCTTTCACATTCAACTTTTGAACTGCTTTTTTCCTTTGGAGAATTTGATTCTACCAAGGTTCCACTTCTTCAAACTTGCAGAATTCCAAAGCCTCAATTCACACAACCAATGGGGAGAGCCACTAGGTGGTTGAAGGGCTTGTTTGGGATAAAGAGAGACAAAGAGAACAAAGAAAATTCAAATTCAGCCACCAAAGGGTCTCCTCATGTTCACTCAGAGAGAGATTCCAAAGGTTTATGTCATAATCCTACCACCATACCACCCAACATTTCACCAGCAGAGGCTGCTTGGCTGCAATCCTTCTACTCCGAATCTGAGACGGAGCAAAGCAAGCATGCTATTGCGGTCGCTGCAGCCACAGCAGCAGCCGCGGATGCTGCTGTGGCTGCAGCTCAGGCTGCCGCGGCGGTAGTTCGGCTAACCAGCCACGGTAGAGACACCATGTTCGGTGGTGGACATCAAAGGTTGGCTGCTGTCAAGATTCAAACAGTTTTTAGAGGATACTTAGCAAGGAAGGCATTGAGAGCCTTAAAAGGATTGGTCAAGTTGCAGGCACTTGTGAGAGGGTACTTGGTGAGGAAGGAAGCAACAGCAACTCTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCCATGGTAAGGTCTCAGAAGTCTCGTGGACTCATGAGCTCAAAGAATGAAGCATACAGGACTCAAACACTAGCAAGAAGATCCATGGAGAAATTTGATGACTATAGGAGTGAGCACACAGCTCCAATCCACAGCAGAAGGCTATCATCTTCTTTTGATAACACCAACAACAGTGTTGATGGGAGCCCCAAAATAGTGGAAGTGGACAATGGTAGTAGGCCAAAATCAAGATCTCGCAGGAGCAACACATCAATTTCAGATTTTGGCGAAGACCCTTCATTTCACTCTCCTCTCCCATTCACAATTCGCACCCCTGCACCTTCAGATAACAGGAATTTCCATGACTCATCAGAATGGGGCCTAACAAGGGAAGAGTGCAGGTTTTCCACAGCACAAAGCACTCCACGCTTCACAAGTTCTTGTAGTTGTGGTGGTTCTGTAGCTGCACCTTTGACACCTAAAACTGTTTGCACTGAAAACCTCTTCATTGGGCAATATGGCAACAATTTTCCAAATTACATGGCAAGCACTAAGTCTTTCAAGGCCAAATTGAGATCTCATAGTGCTCCAAAGCAACGCCCGGAACCCGGTCCGAAGAAGAGGCTTTCCCTCACTGATTTGATGGAATCTAGGAGTAGTTTCAGCGGGGTTCGGATGCAGAGGTCTTGCTCACAGATTCAGGAAGCTATTAGTTTTAAGAATGATGTGATGAGTAAGCTTGAGAAATCCACTGAATTTGGTAGGGAGACAGACAAAACTAGATGGTGA 1401 0.4611 MLSHSTFELLFSFGEFDSTKVPLLQTCRIPKPQFTQPMGRATRWLKGLFGIKRDKENKENSNSATKGSPHVHSERDSKGLCHNPTTIPPNISPAEAAWLQSFYSESETEQSKHAIAVAAATAAAADAAVAAAQAAAAVVRLTSHGRDTMFGGGHQRLAAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKEATATLHSMQALIRAQAMVRSQKSRGLMSSKNEAYRTQTLARRSMEKFDDYRSEHTAPIHSRRLSSSFDNTNNSVDGSPKIVEVDNGSRPKSRSRRSNTSISDFGEDPSFHSPLPFTIRTPAPSDNRNFHDSSEWGLTREECRFSTAQSTPRFTSSCSCGGSVAAPLTPKTVCTENLFIGQYGNNFPNYMASTKSFKAKLRSHSAPKQRPEPGPKKRLSLTDLMESRSSFSGVRMQRSCSQIQEAISFKNDVMSKLEKSTEFGRETDKTRW* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0232 466 ProSiteProfiles IQ motif profile. 179 206 IPR000048 GO:0005515
Lja4g0232 466 MobiDBLite consensus disorder prediction 256 274 - -
Lja4g0232 466 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 38 455 - -
Lja4g0232 466 MobiDBLite consensus disorder prediction 256 327 - -
Lja4g0232 466 ProSiteProfiles IQ motif profile. 155 183 IPR000048 GO:0005515
Lja4g0232 466 SMART iq_5 154 176 IPR000048 GO:0005515
Lja4g0232 466 SMART iq_5 177 198 IPR000048 GO:0005515
Lja4g0232 466 MobiDBLite consensus disorder prediction 55 86 - -
Lja4g0232 466 Pfam Protein of unknown function (DUF4005) 345 427 IPR025064 -
Lja4g0232 466 Pfam IQ calmodulin-binding motif 158 176 IPR000048 GO:0005515
Lja4g0232 466 Pfam IQ calmodulin-binding motif 182 196 IPR000048 GO:0005515
Lja4g0232 466 Gene3D - 154 208 - -
Lja4g0232 466 MobiDBLite consensus disorder prediction 392 412 - -
Lja4g0232 466 PANTHER IQ-DOMAIN 5-RELATED 38 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0232 Lja-Chr4 1840147 1842875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0232 38 430 IQD Protein Family AT3G16490 50.873 1.48e-91 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0232 - - lja:Lj6g3v0485150.1 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0232 4 1840147 1842875 Lja4g0232 4 1840147 1842875 ECH