Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0223 ATGTCGTTTCTCCTCCTTTTATCACCACCTCACTTTCCCCCTGTCATCACTCGTCACACACTTCATTCCTGTTGCAGTTGCGTTATGGAATCGGAGTCGGAGGATGGACAACTCGACCGAGTCGACTCCGAGTTGACTTCCACCACCTCCATTTCCACCATCTCCTCCATACTCACCTCCGACGACTCCTTCAACTTCACCAGCTCCGGCGACATTTCCTCTTCCAGCAGCGGCTCCGGCGAGATCCCAGGCCTGTCCGTTCTCGCACCGCTGCTTCCAGCATCATCTCCGTCGGAGGATGCGGCGGTAGTGAGGGAGAAGTGCGTGGGAAGGAGCAACAAGGGAGTAAGCTGGGGACATACTTCAGTGATCGGGAGGAGGAAGGAGATGGAGGACGCCGTCGCCGTCGTGCCGGGATTCATGTCCTCCACCTGCAACCACATCGGCGGTTGTACGGCACCAGGTTCCAGATCTTCCGGCGAGATCTCTCCCATTCATTTCTTCGGAGTTTACGATGGCCACGGTGGCTCTCAGGTGGCTAAATTTTGTGCCAAGCGGATGCATGATGTTGTAGCAGAGGAGTGGGGCAGAGAAATGGCTGCAGCTGGTGGCGCTGAATGGCAGAGAAATTGGGAAGCTGTAATTGCTAATGGCTTTGAGAGAACTGACAACGAAATCAAATCAGATGAAGTTGCACCGGAAATGGTTGGATCCACTGCCTCCGTGGTGGTTCTATCTGGTTGCCAAATTATCACATCCAACTGCGGTGACTCAAGGGTGGTTCTTTGCCGTAGGACTCAATCAATCCCCTTGACAGTGGATCAGAAGCCTGATAGACAAGATGAACTCTTGAGAATTGAAGGAGAAGGAGGAAAAGTTATAAACTGGAATGGAGCTAGGGTGTTTGGTGTTCTTGCCATGTCCAGGGCCATAGGTGATTGGTACTTGAGACCATGGATTATTCCGGTGCCGGAGATAACTTTTACTGAAAGAACGGACGAGGATGAATGCTTAGTGCTGGCAAGTGATGGACTTTGGGATGTAATGACGAATGAAGAGGTCGGGGAAGTAGCGCGCCACATTCTAAGAAGGCGTCGGAGATCCTTGTCAACAACGGAGGAAATATCTCCCGCACAAGTTGTTGCTGATAGTCTGACTGAAATTGCATGTGGTAGAAATAGCAAAGACAACATTTCTATCATAGTTGTTGATCTCAAATCAAAGGGAAAACGCCAGCAAAGGCCTCCTTAA 1251 0.5092 MSFLLLLSPPHFPPVITRHTLHSCCSCVMESESEDGQLDRVDSELTSTTSISTISSILTSDDSFNFTSSGDISSSSSGSGEIPGLSVLAPLLPASSPSEDAAVVREKCVGRSNKGVSWGHTSVIGRRKEMEDAVAVVPGFMSSTCNHIGGCTAPGSRSSGEISPIHFFGVYDGHGGSQVAKFCAKRMHDVVAEEWGREMAAAGGAEWQRNWEAVIANGFERTDNEIKSDEVAPEMVGSTASVVVLSGCQIITSNCGDSRVVLCRRTQSIPLTVDQKPDRQDELLRIEGEGGKVINWNGARVFGVLAMSRAIGDWYLRPWIIPVPEITFTERTDEDECLVLASDGLWDVMTNEEVGEVARHILRRRRRSLSTTEEISPAQVVADSLTEIACGRNSKDNISIIVVDLKSKGKRQQRPP* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0223 416 ProSitePatterns PPM-type phosphatase domain signature. 167 175 IPR000222 GO:0043169
Lja4g0223 416 ProSiteProfiles PPM-type phosphatase domain profile. 117 405 IPR001932 -
Lja4g0223 416 SUPERFAMILY PP2C-like 109 407 IPR036457 -
Lja4g0223 416 Pfam Protein phosphatase 2C 125 398 IPR001932 -
Lja4g0223 416 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 100 414 - -
Lja4g0223 416 Gene3D - 106 414 IPR036457 -
Lja4g0223 416 PANTHER ALPHABET, ISOFORM E-RELATED 100 414 - -
Lja4g0223 416 CDD PP2Cc 119 405 IPR001932 -
Lja4g0223 416 SMART PP2C_4 107 403 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0223 Lja-Chr4 1766187 1770579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0223 118 415 PP2C-type Phosphatase Gene Family AT4G26080 50.159 1.72e-97 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0223 K14497 - gmx:100782634 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0223 4 1766187 1770579 Lja4g0223 4 1766187 1770579 ECH