Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0222 ATGGACAACTTTAGCGTTATGGTTTCAGAGAACAACAACAGCACAGTGGTCATGCCGGTGGCTAGTACTTCCATAGATTTGGAAATCTTTGATCTCGACGAGGTTCTTACGATGGCCGCCGGAGATTCATCACCTTGCCTAATTGGGGCGTGGAAGGCCTTTGTCTCGACTTTGCCGGCGGTTGTGGATGTCGCAGACGGCGATGTGTGCTCTGTTTGCATGGAAGGATTTGAGCGACAGAGATCGCCTGATGGTAACAAGCGAGTCCCTTGCGGTCACATGTACCATTCAAACTGCATCACCGTGTGGCTGCAGAGCTGCAACTCTTGCCCTCTTTGCCGCCGCCATTTCTCCCTTCACCGCCACTAA 369 0.523 MDNFSVMVSENNNSTVVMPVASTSIDLEIFDLDEVLTMAAGDSSPCLIGAWKAFVSTLPAVVDVADGDVCSVCMEGFERQRSPDGNKRVPCGHMYHSNCITVWLQSCNSCPLCRRHFSLHRH* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0222 122 ProSiteProfiles Zinc finger RING-type profile. 70 114 IPR001841 -
Lja4g0222 122 SMART ring_2 70 113 IPR001841 -
Lja4g0222 122 SUPERFAMILY RING/U-box 60 119 - -
Lja4g0222 122 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 28 117 - -
Lja4g0222 122 Pfam Ring finger domain 69 114 IPR001841 -
Lja4g0222 122 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 28 117 - -
Lja4g0222 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0222 Lja-Chr4 1759328 1759919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0222 33 122 C3H Transcription Factor Family AT3G30460 34.343 1.07e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0222 - K22378 gmx:102669154 143.28