Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0216 ATGGGTGAACAACCCAGCTCAGAAACAGAGAAAATCACTGACATTCCTAAACGTTCATTATCGGAGCCCCGGTCACCCGACCCGAATGAGAAAAGAACCAAGCGGCCCAGAGAAAGCAACGGGAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGGCATGGGGCAAATGGGTATCCGAAATCCGCGAACCCCGCAAGAAGAACCGGATCTGGCTCGGCACATTCGCCACCGCGGAGATGGCGGCGCGTGCTCACGACGTCGCTGCTCTCGCCATCAAAGGAAGCTCCGCCATACTCAACTTCCCTGACCTCGCAGGTTCATTGCCCCGACCCGAGTCCAAATCGCCCAGAGATGTCCAGGCCGCAGCAGCCAAAGCAGCTTCCATGGCGGTTTCCGATTCCAAAACGGCGTCGCATTGCTCTTATTCATCGTCGTCGTCGGAGGAGCTGGGTGAAATAGTGGAGCTGCCGAGGCTGGGAACGAGTTTTGAAATACCCGACCCGGGAAGCGAGTTGGTGTTTTCCGACCCGGTTGATGGGTGGCCTTATTCACACACTTGGTATCATGATGGGCAGGGCATTTATGATGATAGGGACTGTGGAGGGTATTATATTGGGGATCAGATTTCAATGCAGGACTCTGAAAGTTTGATTCTTTGTGGCTTTGAGGCTTCATTGTGGCAGTGGCAACATTAA 696 0.5431 MGEQPSSETEKITDIPKRSLSEPRSPDPNEKRTKRPRESNGKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGSSAILNFPDLAGSLPRPESKSPRDVQAAAAKAASMAVSDSKTASHCSYSSSSSEELGEIVELPRLGTSFEIPDPGSELVFSDPVDGWPYSHTWYHDGQGIYDDRDCGGYYIGDQISMQDSESLILCGFEASLWQWQH* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0216 231 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Lja4g0216 231 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Lja4g0216 231 MobiDBLite consensus disorder prediction 1 46 - -
Lja4g0216 231 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Lja4g0216 231 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Lja4g0216 231 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Lja4g0216 231 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Lja4g0216 231 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Lja4g0216 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 228 - -
Lja4g0216 231 MobiDBLite consensus disorder prediction 10 45 - -
Lja4g0216 231 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 228 - -
Lja4g0216 231 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0216 Lja-Chr4 1708859 1709837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0216 29 204 AP2-EREBP Transcription Factor Family AT5G25810 57.576 1.19e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g0216 AP2 6.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0216 K09286 - gmx:100778201 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0216 4 1708859 1709837 Lja4g0216 4 1708859 1709837 ECH
Lja4g0216 4 1708859 1709837 Lja2g1976 2 20855485 20856618 PCT