Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0206 ATGGAGCGTATCGTTGGCGGCAAATACAAGCTCGGCCGCAAGATCGGAAGCGGATCCTTCGGTGAAATCTACCTCGCTACGCATATTGATACGTTTGAGATCGTTGCAGTCAAGATAGAGAACAGTAAAACTAAGCATCCACAACTGCTTTATGAGGCAAAACTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCGGGCACGAGATGGTCTGGGGTAGACGGGGAGGATAACGTGCTTGTTCTTGATTTGCTGGGACCGAGTCTCGAGGATCTTTTCGTGTATTGTGGAAGGAAGTTTTCGTTGAAGACAGTGTTAATGTTAGCTGATCAAATGATCACTAGAATAGAATATGCACATTCTAAAGGGTTTTTACACAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGACGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTGGCAAAACGATATCGGGACTCCTCAACCAATCGCCACATCCCTTACAGGGAGAACAAGAACTTAACAGGGACTGCACGTTATGCTAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTTTGTACTTCCTCAGAGGAAGTCTTCCTTGGCAAGGTCTGAAGGCTGCAACAAAGAAGCAGAAGTATGATAAAATATGTCAGAAGAAACTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCTGTTGAGTTTGCTTCATACTTCCATTACTGCCACTCTTTGACATTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCCTATTTCGGGACCTATTTGCTCGAGAAGGTTATGACTTTGATTATGTTTTTGATTGGACCATTTTGAAGTATCAGCAATCACAAAAGAATGCAGTGCAGCCCTCCTTATCTTTGCAGCCAGTTCCTGTAGCAAGTAACAGTCGTGGTATTCCAATGGATGCTGACAACCACCAAGGTCTTAATGCATATTCAGGGCACGTCAAAGAGCGCATTAGATCAGGCAATGCTGCTACTTCTGGTGTTAAAATTCAGTTGAAATCTCCAGTTGGTAGAAATTTGAGTTCTGAAAATCCTCTTGACAAGAATATTTTTGGAGAATCAAATATGCCATCTACTTCATATTCTGCTGGTGCTTCAAATCGGACCTCCTTGAAACCTGCCTTTTCTGCTGAAGCTTCCAACCCTGGACAAGGGCAAGGCAGTAAAATTGCCCCTTCAAGTAGTTGGATGTCATCTCTGCAGCGCATTTCTTCTGCCAAATAA 1296 0.4306 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPGTRWSGVDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYAHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSSTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYDFDYVFDWTILKYQQSQKNAVQPSLSLQPVPVASNSRGIPMDADNHQGLNAYSGHVKERIRSGNAATSGVKIQLKSPVGRNLSSENPLDKNIFGESNMPSTSYSAGASNRTSLKPAFSAEASNPGQGQGSKIAPSSSWMSSLQRISSAK* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0206 431 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lja4g0206 431 MobiDBLite consensus disorder prediction 359 431 - -
Lja4g0206 431 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0206 431 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 417 - -
Lja4g0206 431 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0206 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lja4g0206 431 Gene3D Transferase(Phosphotransferase) domain 1 1 318 - -
Lja4g0206 431 PANTHER CASEIN KINASE-RELATED 1 417 - -
Lja4g0206 431 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0206 431 CDD STKc_CK1_delta_epsilon 8 282 - -
Lja4g0206 431 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0206 Lja-Chr4 1627714 1633135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0206 9 234 EF-hand Containing Proteins AT4G23650 28.448 5.95e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lja4g0206 Pkinase 9.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0206 K08960 - gmx:100800342 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0206 4 1627714 1633135 Lja4g0206 4 1627714 1633135 ECH
Lja4g0206 4 1627714 1633135 Lja2g1986 2 20992564 20998916 PCT