Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0203 ATGTCTGTAACAGAGGTTCCTTTTCCTTCAATGGAAAGCTCTGAGAATTTCACAAAGAGGAGCGCTGGCTTGAACCTCAAAGCCACTGAGCTGAGGCTTGGCTTGCCAGGCTCTGAGTCGCCGGAGAGGGAGGGAACCAATGGTTTTTCAGCTCCGCTTAAGGGTTTGTTGTCTGGTGCTAAGAGGGGTTTCTCTGACGCCATTGATGGAGGTTCTGGGAACTGGGTTCTCTCTGGAAACGGTGGATCTGAAATGGGTTCTGGTAAAGATGGTGTCTTGTTCTCTCCTCGGGGTGGTGCTGCCGGTAATTCTCTCGCTCTCTCTGCTGCGCCTAACTGCAACAATCAACTAACGAATATGGCTTCTTCTGTTGTCAAAGAGAGTGTTCCTCAGTCTCCGAAGCCGTTGAATGAGAAGAAGCCTCAGATTTCTGCTCCTGCTGCAAAGGCACAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAATTCCATGGCTTCTCAGCCTCAAAAGGATGATGCTGATGCGGAAGCCAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTAAATAGTTTCAGCACTTACAGGGAACTTTCTTCAGCACTTGAAAAGATGTTCAGTTGTTTTACAATCAGTCAATGTGGGGCTTATGGAGTTTCTAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCGGAATATGTGCTAACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACCGACTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGGGCCATGGAAAAGTGCAAAAGCCGCACCTAG 912 0.4737 MSVTEVPFPSMESSENFTKRSAGLNLKATELRLGLPGSESPEREGTNGFSAPLKGLLSGAKRGFSDAIDGGSGNWVLSGNGGSEMGSGKDGVLFSPRGGAAGNSLALSAAPNCNNQLTNMASSVVKESVPQSPKPLNEKKPQISAPAAKAQVVGWPPIRSFRKNSMASQPQKDDADAEAKSGCLYVKVSMEGAPYLRKVDLNSFSTYRELSSALEKMFSCFTISQCGAYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRT* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0203 303 Gene3D - 177 297 - -
Lja4g0203 303 MobiDBLite consensus disorder prediction 129 149 - -
Lja4g0203 303 SUPERFAMILY CAD & PB1 domains 180 284 - -
Lja4g0203 303 ProSiteProfiles PB1 domain profile. 183 285 IPR000270 GO:0005515
Lja4g0203 303 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 296 IPR003311 GO:0005634|GO:0006355
Lja4g0203 303 PANTHER AUXIN-INDUCED PROTEIN 16 296 - -
Lja4g0203 303 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g0203 303 Pfam AUX/IAA family 29 294 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0203 Lja-Chr4 1616589 1619869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0203 187 293 B3 DNA Binding Superfamily AT4G23980 30.841 1.85e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja4g0203 AUX_IAA 5.1e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0203 K14484 - gmx:100803754 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0203 4 1616589 1619869 Lja4g0203 4 1616589 1619869 ECH
Lja4g0203 4 1616589 1619869 Lja2g1992 2 21082300 21086284 PCT