Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0201 ATGAATAGAAGTGTCTTGCAAAGCTCCCCGGTGCAACAAATGATGGCTGGGAACCCTAACAACTTGTGGAACTTCAACACCATGCACTCTCCTTCTCAACAACCTTCTCCTAATTTCTTTTCCAATTCTTCTAATAACTTCCTAACCCCACATCATGCCCCTCCTTCTTCTTTTCCTTTTCCTCCTTGGCATGACAATCAAGAGCTTCCTGAGTCATGGAGCCAATTACTCATGAGTGGACTTATGTCTGAAGAAGACAAGGCTGGCATGTGCCAAATGCTAATAAGTCAGGCTTCAAATACTTCTCTTGTTGATGTTAAGCAAGAAAGCTCAGCAAATAGCTATGTTTTTGGACATGGTAATGAAGAATTTCAGGCAGCAAACCCCACCTGGTCTCAACTAGGATCTGGTTCTTCTTCTTCTTCCAAATCTAGTGGTACAAGTTTCAGCAGCAGTGTGTTGGATTTCTCTAACAATAAGACAGATGCAAGGCCTCTTGCATCAGATCCATCTTCTGAGTGCAATAGCACTGGAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCATCTACAACTCAATCTACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTATTAGAGGCTATTGGTTACATCAGATTCCTTCAGAGTCAAATTGAGGCTCTTAGCTTGCCATACTTGGGGAGTGGATCAGGGAACATGAGGCATCAACAATCTGTTCAAGGAGATCAGAGGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAAAACTGTTTGAAGAGGAAAGCAGCTGGTGATCAGGATTCACAAGAAGAACAAAAGAAGGATCTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTTTCATGCACACTCCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCTCCTGCTTTTGGAGGGGAATTTCGTTAA 1011 0.4392 MNRSVLQSSPVQQMMAGNPNNLWNFNTMHSPSQQPSPNFFSNSSNNFLTPHHAPPSSFPFPPWHDNQELPESWSQLLMSGLMSEEDKAGMCQMLISQASNTSLVDVKQESSANSYVFGHGNEEFQAANPTWSQLGSGSSSSSKSSGTSFSSSVLDFSNNKTDARPLASDPSSECNSTGAGGAFKKARVQPSTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRHQQSVQGDQRNCIFPEDPGQLLNENCLKRKAAGDQDSQEEQKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGEFR* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0201 336 MobiDBLite consensus disorder prediction 29 52 - -
Lja4g0201 336 MobiDBLite consensus disorder prediction 29 53 - -
Lja4g0201 336 PANTHER OS05G0228400 PROTEIN 16 322 - -
Lja4g0201 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 248 IPR036638 GO:0046983
Lja4g0201 336 MobiDBLite consensus disorder prediction 160 196 - -
Lja4g0201 336 Gene3D - 194 248 IPR036638 GO:0046983
Lja4g0201 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 322 - -
Lja4g0201 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Lja4g0201 336 MobiDBLite consensus disorder prediction 160 178 - -
Lja4g0201 336 CDD bHLH_AtbHLH_like 196 245 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0201 Lja-Chr4 1584802 1589090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0201 1 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 42.614 1.16e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0201 - - lja:Lj0g3v0105629.1 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0201 4 1584802 1589090 Lja4g0201 4 1584802 1589090 ECH
Lja4g0201 4 1584802 1589090 Lja2g1993 2 21145709 21150746 PCT