Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0200 ATGGCCACCGTAACCGTCACCACTCGCTCTCAAATCCTCTGCTACACCGCCTCATTCATCTCCGGCGTTCTCTCTCAACCCGAACTCCGCCGCCGCCTCATCGCCACCCTTCTCAACCTCACTCCGATCACCAACCAACTCACACTCAAACACCTCAACCTCGCAGCAGACTCTCTCGAACGCGCCATCTCCCTCTCCACCCCGGCTCTCCGCTCCTCTTCCCTCTCCCTCGCCGAGAAGCTTCTCCTCCCTCTCCCTGAATACCCTGTCTCCTCCTTCCTCCTCTCTCTAATCCGCTCCCTCTCCAACCGCCCCGACGAATCTGCAACCAGCCTCCTCCGAATCTTCCACTCTAGCCCTTCCCTCGCCCGGTCGGAAATCGCGCCTTCTCTCTACGAACGCCTCTTCTCCCTCCACCTCCTCCCTGTTTTCTGGCGATTTGATCAACTGAGATCGCAAATTTTGTCCCACGACGACACCGGTGATTACTCCGATTCCGATTACTCCTCCGCGGTCCTACCTTCCGCGAAACTGCTTTCGAAGATGAGCGGGGATCAAGCCTCGAAGGTGAGAGAGCTGGAGGGAGAGTACTCTGAGGTTCTGGATGAGAATTGCAGAATTCTTGCGGAGTATTTCAAAGAGGTTTTGGTGAATAGAGACGGAGACGCCACGTCAATTAGTCCGCCATTGTTGATACTGAAGAGCGCCGCAGAAGATGGCGGCAGGGAGAAGGAGAACAGAAAGGAGCAAATACCGACGGAGCCGCCGCCTGTGTTGCAGAATGGACGGTATAATCCAATGTGGTCTGAAAGGGATGCATCTACTGAATTTTTGAGCAGCAGTTCTAGTGGTAGATCCTCCCATTCACCATTATATCCTCAAAGAGTCTCTCCCAGAATCCCCAAACCCCCAAAACCTTCAAAACATTGGACATCACCAGTCTATTTAAACTCACCCGCCGAAACTGTATTCACTCTAGATGAGAATTTACTTTGTTCCACATCAGATTCTGAAGCAGAAAATGAGGAAAAGGACAAAAACATGGCATTGTTGAAGCCTCGACGAAGCCAATCCCAGGAACAAATGCAAACCGTCTTCAAAGAATCCAGAGGTTCCCCAGATTCTCCAATGGCAGACTACGACAACCCGCCGCCGCATGGAAATGGAAAGCAACCACCTCCCAAAGATTTTGTGTGTCCAATCACTAGTAACATATTTGATGATCCGGTGACTCTTGAGACTGGTCAGACATTTGAACGCAAAGCTATTGAGGAATGGTTCAATAGAGGAAACATAACTTGTCCTATCACTCGCCAGAAGCTGCAAAATACTCAGCTACCAAAGACAAATTATGTGCTCAAAAGACTAATTGCAAGCTGGAAAGAACGCAACCCGAATTCTGTCCCTCCACCATGTGAGAGTTCATGTGAAGATAGTGCAGATGCAGAGACAGTGGTGAAGACAACAACAATGCCTTCAACTTCTCCTAATAGTGTTATAACACAAGCTACAGTTGATGGGATGATCAATGAGTTACGCTATGCAATCAATAACCTGTATATGTCAGAGATTCTTGAGGAATCTGAAAAGGCTGTGCTTCAAATTGAGAAGCTGTGGAGAGGAGTGAATCTGGGAGTGGATATCCATAGCATGCTCTCAAAGCCTCCTATAATTAATGGTTTTGTTGAGATCCTTTTCAATTCTGTGGAGCCCCAGGTGCTTCAAGCAGCAGTTTTCCTTCTGGCTGAGATGGGGTCTAGAGACAATGCTGTGATTCAGACTCTCACACGTGTGGACACTGATGTGGAAGGTATCGTGGCTCTTTTTAAGAAAGGGTTGACAGAGGCTGTTGTGCTGTTGTATCTCCTAAACCCTTCTGATGTGAGTCTTACAGAGATGAACATGGTGGAGTCTCTCATATCAGTTTTCAGTGAGAAAGAGGAAGACTTAGTTAAGATGTGTTTGAAGCCGAAAACAGCTGCAGTGCTTTTACTGGCACATATTACTGGAAGCAGTGAGGAGATTATTGCATCTTCTGCTGTCAAGACTTTGTTCTCTGAAAAAGCAATTGGAACTATTGTGGGAAGTTTGGGAGCTGAGTGGGGAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGTATGCAAGAGGATGGGACTTGCAGGAACACCATTGCTGATAAAGTAGAGCTGTCTCCTATTTTGGAAAGCTTCATTAGTGCCAATGATGGAGAGCGTTTTAAGATTGTTACATTTTTCTCTGAGTTAGTCAAATTAAATAGGAGAACATTCATTGAACAAATCCTCCACATTATAAAGGAAGAAGGACTTTTTAGTACAATGCATATTCTCCTTATTCATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTCATGGCTGGCCTCTTACTCCAACTGGATCTTCTGGATGAACCAAGAAAGATGAGCATATATCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGAGAAACACAGATTTCCCTGCTACCCAATTAGCAGCTGCAGAGACAATCATGTCACTGCAAGGGATGTTTAGCTTCTCTGGAAAACCTCTTATCAGAGAAGTCCTTCTTAAACGAGCAGACACTCGCAAAAGTTCCAGAAGTTCTGTACCTGTGGATCAGATGAGCACCTTGTTCCCAGAGATTGAAATTACTCCAGAAGAAGAGAAGGCAGCTAATGATTGGGAAAGAAAAATTGCCTTTGTCCTAGTTAGTCACGAATTGGGCATAGTTTTCGAAGCTTTAGCAGATGGCATGAAGAGCCGAAATCCACAACTACGTTCAGCATGCTTTACTTCAGCTGCGTGGCTTGTATACATGTTGACCATTCTACCAGATACAGGAATACATGGAGCAGCGCGAGTCTGCTTGTTGAAGCTGTTCTTAAGTAAATTAAATTCTGCTAAGGATGTAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCTTACGTGATATAAGTTCCTACAATAACGATATCTTAAAAGGTTTGCGAGAGCTAAAGAGATCGTCTCCCTTGGCATCTGAAATGCTAAAAGTTTTGGTCAAAGAGAATGAGTCCACATCAGACATTTGGATACATAAAGAGCTAATCCAAGTAGAATGCAGAGAGAATGGAGGAGTGTTGTCTGTCATCTGCTTTAAGGATAAAGTATTTTCAGGTCATGCAGATGGCAGTATTAAGGTCTGGAAATTAAAGGATAACTTATTCCATCTATTGCAAGAGATCCAAGAACACACTAAAGCTGTGACAAACTTGGTGATTTCAGAATCTGGGGACAGACTATACAGCGGTTCACTTGACCGAACTACTAAGATCTGGTCTATTGGAAAGACAGCAATACACTGTGCACAGGTTCATGATATGAAGGACCAGATTCATAAATTAGTTGTAACCAATAGCATAGCATGTTTCATCTCGCAGGGGGCTGGTGTCAAGGTTCAGCCATTGAATGGAGAATCAAAGTTGTTAAATTCTAATAAATATGTGAAATGCTTGACTCATGCTAATGGGAAATTATACTGTGGATGCCACGACAGTAGTGTCCAGGAGATACATTTGGCCACTGGAACAGTTAGTAGTATTCAAAGTGGTTCTAAAAAATTGCTTGGGAAAGCATATCCTATTCATGCACTTCAAATTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGATGGATCTGCTGTAAAGATATGGAACAATTCCAATTACAGTTTGGTTGGATCACTGCAAACTGGATCTGAAGTGCGGGCTATGGCAGTGAGTTCAGAATTAATTTATTTGGGGTGCAAGGGAGGTGCTGTAGAAATTTGGGATAAGAAGAAACATAGTAGAGTTGACACATTACAAGTGGGTACGAATTGTAAGGTTAATTGCATGGCTCTAGACAGCATTGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGGAATGAATTAA 4014 0.4442 MATVTVTTRSQILCYTASFISGVLSQPELRRRLIATLLNLTPITNQLTLKHLNLAADSLERAISLSTPALRSSSLSLAEKLLLPLPEYPVSSFLLSLIRSLSNRPDESATSLLRIFHSSPSLARSEIAPSLYERLFSLHLLPVFWRFDQLRSQILSHDDTGDYSDSDYSSAVLPSAKLLSKMSGDQASKVRELEGEYSEVLDENCRILAEYFKEVLVNRDGDATSISPPLLILKSAAEDGGREKENRKEQIPTEPPPVLQNGRYNPMWSERDASTEFLSSSSSGRSSHSPLYPQRVSPRIPKPPKPSKHWTSPVYLNSPAETVFTLDENLLCSTSDSEAENEEKDKNMALLKPRRSQSQEQMQTVFKESRGSPDSPMADYDNPPPHGNGKQPPPKDFVCPITSNIFDDPVTLETGQTFERKAIEEWFNRGNITCPITRQKLQNTQLPKTNYVLKRLIASWKERNPNSVPPPCESSCEDSADAETVVKTTTMPSTSPNSVITQATVDGMINELRYAINNLYMSEILEESEKAVLQIEKLWRGVNLGVDIHSMLSKPPIINGFVEILFNSVEPQVLQAAVFLLAEMGSRDNAVIQTLTRVDTDVEGIVALFKKGLTEAVVLLYLLNPSDVSLTEMNMVESLISVFSEKEEDLVKMCLKPKTAAVLLLAHITGSSEEIIASSAVKTLFSEKAIGTIVGSLGAEWGEERIAAVEILLRCMQEDGTCRNTIADKVELSPILESFISANDGERFKIVTFFSELVKLNRRTFIEQILHIIKEEGLFSTMHILLIHLQTALQDQCPVMAGLLLQLDLLDEPRKMSIYREEAIDTLISCLRNTDFPATQLAAAETIMSLQGMFSFSGKPLIREVLLKRADTRKSSRSSVPVDQMSTLFPEIEITPEEEKAANDWERKIAFVLVSHELGIVFEALADGMKSRNPQLRSACFTSAAWLVYMLTILPDTGIHGAARVCLLKLFLSKLNSAKDVEDRILSMLALNSFLHFSDGLRDISSYNNDILKGLRELKRSSPLASEMLKVLVKENESTSDIWIHKELIQVECRENGGVLSVICFKDKVFSGHADGSIKVWKLKDNLFHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTTKIWSIGKTAIHCAQVHDMKDQIHKLVVTNSIACFISQGAGVKVQPLNGESKLLNSNKYVKCLTHANGKLYCGCHDSSVQEIHLATGTVSSIQSGSKKLLGKAYPIHALQIHGELIYAAGSSLDGSAVKIWNNSNYSLVGSLQTGSEVRAMAVSSELIYLGCKGGAVEIWDKKKHSRVDTLQVGTNCKVNCMALDSIEEILVIGTSDGQIQAWGMN* 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0200 1337 Gene3D - 1163 1337 IPR015943 GO:0005515
Lja4g0200 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 469 IPR013083 -
Lja4g0200 1337 SMART WD40_4 1045 1082 IPR001680 GO:0005515
Lja4g0200 1337 SMART WD40_4 1207 1253 IPR001680 GO:0005515
Lja4g0200 1337 SMART WD40_4 1295 1335 IPR001680 GO:0005515
Lja4g0200 1337 SMART WD40_4 1087 1126 IPR001680 GO:0005515
Lja4g0200 1337 SMART WD40_4 1256 1292 IPR001680 GO:0005515
Lja4g0200 1337 Gene3D - 1037 1162 IPR015943 GO:0005515
Lja4g0200 1337 MobiDBLite consensus disorder prediction 352 370 - -
Lja4g0200 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1094 1127 - -
Lja4g0200 1337 SUPERFAMILY WD40 repeat-like 1056 1336 IPR036322 GO:0005515
Lja4g0200 1337 ProSiteProfiles U-box domain profile. 392 467 IPR003613 GO:0004842|GO:0016567
Lja4g0200 1337 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1336 - -
Lja4g0200 1337 Pfam WD domain, G-beta repeat 1091 1126 IPR001680 GO:0005515
Lja4g0200 1337 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1336 - -
Lja4g0200 1337 CDD RING-Ubox_PUB 397 439 IPR045210 -
Lja4g0200 1337 Pfam U-box domain 394 464 IPR003613 GO:0004842|GO:0016567
Lja4g0200 1337 MobiDBLite consensus disorder prediction 237 313 - -
Lja4g0200 1337 SUPERFAMILY RING/U-box 391 470 - -
Lja4g0200 1337 MobiDBLite consensus disorder prediction 272 293 - -
Lja4g0200 1337 SUPERFAMILY ARM repeat 26 1017 IPR016024 -
Lja4g0200 1337 SMART Ubox_2 396 460 IPR003613 GO:0004842|GO:0016567
Lja4g0200 1337 MobiDBLite consensus disorder prediction 337 351 - -
Lja4g0200 1337 MobiDBLite consensus disorder prediction 334 398 - -
Lja4g0200 1337 Gene3D - 531 851 IPR011989 -
Lja4g0200 1337 MobiDBLite consensus disorder prediction 237 251 - -
Lja4g0200 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1094 1127 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0200 Lja-Chr4 1575657 1582129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0200 394 469 U-box Gene Family AT5G42340 47.368 1.81e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0200 - - gmx:100808867 1994.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0200 4 1575657 1582129 Lja4g0200 4 1575657 1582129 ECH