Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0198 ATGGAGCGTCGACCCAAGAGCTGGAGCATCCATACCCGAACCGAGATCACCGCCAAGTACCAAGTCATGGACCGGATCGGCTCCGGAGCTTACGCCGACGTCTACCACGGCCGCCGTCTCTCCGACTACCTCACGGTGGCTCTCAAGGAGATTCACGACTACCAGTCCGCCTTCCGAGAAATCGAGGCTCTCCAGATGCTCCAAGGCTTCCCAAACGTCGTCGTCTTGCACGAGTACTTCTGGCAAGAAGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCCGTACTGACCTCGCCACCGTCATCGCCGACGCCGCCAAACATGGAGGTCTCCCCGTCGGCGAGATCAAACAGTGGATGGTCCAGATTCTCTGTGGCCTCGATGCTTGTCACCGGAACTCGATCGTTCATCGTGACTTGAAGCCTTCTAATCTCTTGATTTCTGAAACTGGTGTCCTCAAATTGGCAGATTTTGGACAGGCAAGGATACTTACAGAACATGGATTTGATGCTTCAGAGATGAACCAACAACCATTTGAACATGATGCAGCTAATCATGAAAGTTCACTTCAAAATCAACCTGAAGGTTTTCCTCAGACAGACAGCTTAGGCCAAGCTGGATATGGAAATCAAGAGGAGGGAACCATTTCTCATGAAGAGCATTATAGAGTTTTAGATGAGGTGGAAGCGAAGAGCTCTGCGGATGACTTTGATAAGGATACAGACATTCATGATGGGAATACCTCTTGTCGTGCGACGTGCACGACGAATGACATGGATAACGATCCTCTAGAGACTTCTTTTAGTTATGAAGCAATGGAGGAGGAAGGTAAAGAGCTCGGGTGTCTGACATCGTGTGTTGGAACTCGTTGGTTCAGGGCGCCTGAGTTGCTTTATGGATCGACAAATTACGGTTTCGAGATTGATCTCTGGTCCTTGGGGTGTATATTTGCAGAGCTTTTGACTCTGAAGCCATTGTTTCCTGGAACTGCTGACATTGATCAGCTCAGCAGGATTATTAATGTTTTGGGCAACCTTGATGAGAAAGCTTGGCCTGGTTGTTCGAAACTTCCTGATTATGCAATAATCTCGTTTAGCAAAGTAGAAAACCCTCCTGGTGTTGAAGCCTGCCTCCCCGACCGCTCCCCCGATGAAGTGTCTTTGATAAAAAAACTGGTTTGTTATGATCCAGCCAGGAGAGCTACAGCAATGGAACTCCTCCATGACAAGTACTTCAGTGAAGAACCTCTTCCTGTTGCTGTTTCTGAGCTTCGAGTTCCTTTAACTAGGAAAGGACAGGACGAGGATTCGCTTGGTGGATATGATTACAATGACATGGGTTCTGATTCTGATTTTGATGACTTTGGCCCTATGAATGTCACCAAAACTGGTACTGGTTTCTCCATACAGTTCCCTTGA 1419 0.4848 MERRPKSWSIHTRTEITAKYQVMDRIGSGAYADVYHGRRLSDYLTVALKEIHDYQSAFREIEALQMLQGFPNVVVLHEYFWQEDEDAVLVLEFLRTDLATVIADAAKHGGLPVGEIKQWMVQILCGLDACHRNSIVHRDLKPSNLLISETGVLKLADFGQARILTEHGFDASEMNQQPFEHDAANHESSLQNQPEGFPQTDSLGQAGYGNQEEGTISHEEHYRVLDEVEAKSSADDFDKDTDIHDGNTSCRATCTTNDMDNDPLETSFSYEAMEEEGKELGCLTSCVGTRWFRAPELLYGSTNYGFEIDLWSLGCIFAELLTLKPLFPGTADIDQLSRIINVLGNLDEKAWPGCSKLPDYAIISFSKVENPPGVEACLPDRSPDEVSLIKKLVCYDPARRATAMELLHDKYFSEEPLPVAVSELRVPLTRKGQDEDSLGGYDYNDMGSDSDFDDFGPMNVTKTGTGFSIQFP* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0198 472 SUPERFAMILY Protein kinase-like (PK-like) 6 425 IPR011009 -
Lja4g0198 472 Pfam Protein kinase domain 20 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0198 472 Pfam Protein kinase domain 278 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0198 472 PANTHER CYCLIN-DEPENDENT KINASE 10 16 421 - -
Lja4g0198 472 ProSiteProfiles Protein kinase domain profile. 20 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0198 472 Gene3D Transferase(Phosphotransferase) domain 1 9 202 - -
Lja4g0198 472 Gene3D Transferase(Phosphotransferase) domain 1 233 427 - -
Lja4g0198 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Lja4g0198 472 MobiDBLite consensus disorder prediction 182 211 - -
Lja4g0198 472 SMART serkin_6 20 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0198 472 PANTHER CELL DIVISION PROTEIN KINASE 16 421 - -
Lja4g0198 472 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0198 Lja-Chr4 1567089 1569168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0198 1 472 Core Cell Cycle Gene Families AT4G28980 61.954 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Lja4g0198 Pkinase 2.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0198 - - mtr:MTR_8g103240 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0198 4 1567089 1569168 Lja4g0198 4 1567089 1569168 ECH
Lja4g0198 4 1567089 1569168 Lja2g1999 2 21263031 21264121 PCT