Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0197 ATGGGGGAAGGTGAAGGAGGAGGTGATTGCCCTCCGAATAATGCATCGTTAGAGGGGGTGCTTCTGCCGTCGAAGAAGCTTGCCAGACAGCTCGATTTTACCGCCTTTGGTGGGGTGCCGCCGGAACCACCACAGCCGCCGCCGACACTGCCTCTTCTTCCTTCAGTCAGGCCTGTGAAACCAGAATCTCCAAAATCAAAATCAAGAACCAACTTTGAAATTAAAGACACTACTACTCCGAAGAAGCAAAAGCAGTGCAATTGTAAACATTCTAAATGCTTAAAGCTATATTGTGAATGTTTTGCTTCTGGAATATATTGTGACGGTTGCAATTGTGTAAATTGTTATAACAATGTTGATAATGAAGCGGCTAGACGAGAAGCTGTTGAAGCTACTTTAGAACGCAATCCAAATGCATTTAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTGATATCAGGGAGGAGGCCGGGGAAATTTTAATATTGGGAAAGCACAACAAAGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAAAAGTACTGCGAGTGCTTCCAAGCCAATATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGCAGTGAAGAGAGACAGGCTTTGTTCATTGGAGATCAAAATAACAACATAGCGCATATTCAGCAGGCAGCAGCAGCCAATGCTGCCATTACTGGAGCTATTGGTTCCTCTGGTTTTTCATCGCCACCAGTATCGAGAAAGAGAAAAAGTTCAGAACTCTTCTTTGGGCCTACCATGAAGGATCCATCCGTTGGCAGACTGGGACAACAGGCAAACCATGTCAGAGCTCATGCACCCTCCTCATCCATGTCTCCTATCCCAGGTGCTCGTGTTGGACCTACAAGTGGTCCTTCAAAATTTATGTACAGGTCCCTTTTAGCAGACATCATTCAACCACAACACCTGAAGGAGCTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCTAAGACACTTACAGACCAGAAAAATTTGATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTCTTGCTTCTTCCACTCAAGAGCAATTACCAAGCCAAAAGGACGTTGATGTTGAGAAAGCTATGGCTGATGATCGCTCAAGTGCAAACCAAGCAGATAAAATCAGCCCTGGTAATTCCAGTTCAGAGGAAGCTGATGTTCCAAAAGGGAGACCAATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATCCAATGTTCATGACAGCTTCCTCCCCTATTGGAACAATGGCTCGTCAGTGTAACCCGTCTTCGCAATCACCTTATGGGCAAGGAATGACTGAGATCCATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTCGAGATTTTCTTAATAGGGTTATCACCATGGGAGAAATAAATGAAACAAAGTGTTCATCATTAGCGAGAAGTGAATTAGAATCTCAAAAGGACCCTATCATCAATGGCATTGCAAATGCCAGTACGGAGAGGACGCAGCAGCAGGGAGCCACTAGTAATGGTGTTGCCAAAGCTATTGGTAACTCCATTACTTCAACATCTTTGGTCCCTAGGAGTCCTGTTCCTGAAAATGGGGAGTCTAAGCCGAAGGTCGAAAAATAG 1656 0.445 MGEGEGGGDCPPNNASLEGVLLPSKKLARQLDFTAFGGVPPEPPQPPPTLPLLPSVRPVKPESPKSKSRTNFEIKDTTTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVDNEAARREAVEATLERNPNAFRPKIASSPHGTRDIREEAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFIGDQNNNIAHIQQAAAANAAITGAIGSSGFSSPPVSRKRKSSELFFGPTMKDPSVGRLGQQANHVRAHAPSSSMSPIPGARVGPTSGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKNLMDKHAEDQTETSLASSTQEQLPSQKDVDVEKAMADDRSSANQADKISPGNSSSEEADVPKGRPMSPGTLALMCDEQDPMFMTASSPIGTMARQCNPSSQSPYGQGMTEIHAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPIINGIANASTERTQQQGATSNGVAKAIGNSITSTSLVPRSPVPENGESKPKVEK* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0197 551 MobiDBLite consensus disorder prediction 346 414 - -
Lja4g0197 551 MobiDBLite consensus disorder prediction 505 538 - -
Lja4g0197 551 SMART CXC_2 81 121 IPR033467 -
Lja4g0197 551 SMART CXC_2 166 207 IPR033467 -
Lja4g0197 551 MobiDBLite consensus disorder prediction 505 551 - -
Lja4g0197 551 MobiDBLite consensus disorder prediction 39 58 - -
Lja4g0197 551 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 53 524 - -
Lja4g0197 551 PANTHER TESMIN/TSO1-RELATED 53 524 IPR028307 -
Lja4g0197 551 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 83 118 IPR005172 -
Lja4g0197 551 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 169 203 IPR005172 -
Lja4g0197 551 MobiDBLite consensus disorder prediction 384 398 - -
Lja4g0197 551 MobiDBLite consensus disorder prediction 368 382 - -
Lja4g0197 551 MobiDBLite consensus disorder prediction 33 76 - -
Lja4g0197 551 ProSiteProfiles CRC domain profile. 82 206 IPR005172 -
Lja4g0197 551 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0197 Lja-Chr4 1559372 1565379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0197 1 522 CPP Transcription Factor Family AT4G29000 53.528 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lja4g0197 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0197 - - gmx:100818116 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0197 4 1559372 1565379 Lja4g0197 4 1559372 1565379 ECH