Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0188 ATGCCATCCCTCTCTATCTTCCCATCATCACTGCCATCGCTTCAAAACCCTAACTTGGACCATGCCCACCTCTTCAAATCCATCAACCTCCGTTTAAATTCACCACCACACTGTCACCGCCACTTTCCGCACCTCAATCTTCACCGGAGAACCCACCTCAAAGCTTTCAGGGATTCCGGCAAAGATACAAAGACGGTGTTGGACTCTGGTGGAGGAGGCGGAGACGGCGGCGGCGATGACGACGACGGCGGGGGTGACCGGGATGTGGAGAAAAAAGATGGGTCTTCGGGGCCTTTGCCAGAGTGGTTGAATTTCGATTCTAATGACGCAAAAACGGTGTTTGCGGCTCTGGCGATTTCGCTTGCGTTTCGTACGTTCGTGGCTGAGCCGAGGTACATTCCTTCGTTGTCAATGTATCCTACATTTGATGTTGGAGATCGACTTGTTGCTGAGAAGGTATCATACTATTTTAGAAAGCCTTGTGCAAATGACATAGTGATATTCAAAAGTCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAAACGTATAGTTGCAAAGGAAGGTGATATCGTGGAGGTTCGTGATGGGCATCTTATAGTTAATGGGGTTGAAAGGAATGAAAAGTTCATCCTTGAACCACCTTCTTATGAGATGAAACCCACACGTGTACCAGAGAACTATGTTTTTGTGATGGGAGACAACCGCAATAACAGCTATGATTCCCATGTGTGGGGTCCCCTCCCAGCCAAGAACATAATAGGCAGATCAGTGTTCCGCTATTGGCCACCAAATAGAATTGCCGACACAATTTCTAAGGAAGGTTGTGCTGTTGATACAAAGCAAGAGACTGAGGAGAGTACTACTGTACCTTCTCAATAA 897 0.4671 MPSLSIFPSSLPSLQNPNLDHAHLFKSINLRLNSPPHCHRHFPHLNLHRRTHLKAFRDSGKDTKTVLDSGGGGGDGGGDDDDGGGDRDVEKKDGSSGPLPEWLNFDSNDAKTVFAALAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRIVAKEGDIVEVRDGHLIVNGVERNEKFILEPPSYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIADTISKEGCAVDTKQETEESTTVPSQ* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0188 298 MobiDBLite consensus disorder prediction 58 102 - -
Lja4g0188 298 Gene3D Umud Fragment, subunit A 123 281 - -
Lja4g0188 298 TIGRFAM sigpep_I_bact: signal peptidase I 111 269 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja4g0188 298 MobiDBLite consensus disorder prediction 278 298 - -
Lja4g0188 298 Pfam Signal peptidase, peptidase S26 110 267 IPR019533 GO:0004252|GO:0006465
Lja4g0188 298 PRINTS Bacterial leader peptidase 1 (S26A) family signature 229 248 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja4g0188 298 PRINTS Bacterial leader peptidase 1 (S26A) family signature 126 142 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja4g0188 298 PRINTS Bacterial leader peptidase 1 (S26A) family signature 185 197 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja4g0188 298 SUPERFAMILY LexA/Signal peptidase 124 272 IPR036286 -
Lja4g0188 298 ProSitePatterns Signal peptidases I serine active site. 135 142 IPR019756 GO:0004252|GO:0016021
Lja4g0188 298 ProSitePatterns Signal peptidases I signature 3. 234 247 IPR019758 GO:0004252|GO:0016021
Lja4g0188 298 CDD S26_SPase_I 129 261 IPR019533 GO:0004252|GO:0006465
Lja4g0188 298 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 95 278 - -
Lja4g0188 298 PANTHER SIGNAL PEPTIDASE I 95 278 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0188 Lja-Chr4 1486682 1489241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0188 138 268 MADS-box Gene Family AT1G29960 32.331 5.62e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0188 K03100 - gmx:100815810 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0188 4 1486682 1489241 Lja4g0188 4 1486682 1489241 ECH