Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0173 ATGACAAGCCACGCTGAAAACGAAGCCTTGCCTGTCACCGTGAAGTTCACCAAACTCTTCATCAATGGAGATTTCGTTGATTCAGTTTCAGGAAGAACATTTGAGACAATAGATCCAAGAACAGGAGATGTTATAGCGAGCATTAGTGAGGGAACCAAAGAAGACATTGATATTGCAGTGAAGGCCGCACGTCAAGCATTTGACTCAGGTCCATGGCCACGCTTGCCCGGTGCTGAGAGAGCAAAAATTATGATGAAACTCGCAGACTTAATTGATGAAAACACAGAAGAACTAGCAGCATTGGATGCCATTGATGCCGGCAAGTTGTACCACATGTGCAAGGCTATGGACATTCCTGGAGCAGCAAAAACTTTGCGTTACTTTGCCGGTGCTGCCGATAAAATTCACGGCGAGGTATTAAAAGCGTCACGGGAGCTTCATGCTTACACACTGATGGAACCGGTTGGTGTTGTAGGCCACATCATTCCCTGGAATTTCCCAGCCTCCTTCTTCTTCACCAAGGTTAGCCCTGCCTTAGCTGCAGGGTGCACCATGGTCCTCAAGCCTGCAGAGCAAACACCACTCTCTGCTTTGTTCTGTGCTCATCTTGCTAAATTGGCTGGAATCCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGCTCAACTGCTGGTGCTGCAGTGAGCTCACACATGGATATTGATGCGGTCAGCTTTACTGGTTCAACACAAACAGGGCGTGAGGTAATGAAGGCAGCAGCTAGCAGTAACTTGAAACGAGTTTCGCTGGAATTAGGAGGCAAATCACCCCTCATAATTTTCAATGATGCTGATATAGACAAAGCTGCTGAACTTGCTCTATACGGCATCCTATTAAATAAGGGTGAAGTTTGTGTTGCAAGTTCCCGTGTGTTCGTTCAAGAAGGGATCTATGATGAATTTGAGAAGAAATTGGTGGAGAAGGCAAAAGCTTGGGTCGTTGGGGACCCTTTTGATCCTAAAGTTCAACAAGGGCCTCAGGTTGACAAGAAACAATTTGAAAAAATTCTTTCATATATTGAGCATGGAAAGAGAGAAGGAGCTACCCTTTTGACTGGGGGTAAATCAGTGGGTAACAAAGGCTACTACATTGAACCAACCATTTTCTCCAATGTAAAGGAGGATATGCTTATAGTACAGGATGAAATATTTGGCCCTGTGATGGCACTGAAGAAGTTTAAGACTGTTGAGGAAGCAATTAAGAGTGCTAACAATACCAGATATGGTTTAGCAGCTGGCATTATGACCAAGAACTTGGATATAGCAAACACAGTGTCAAGGTCCATTCGTGCAGGCAGTGTTTGGATCAACTGTTATTTTGCCATTGACAATGATATTCCTTTCGGAGGGTATAAGGCGAGTGGGTTTGGAAAAGATTATGGATTGGAAGCCATTCACAAATACTTACAAGTTAAATCTGTTGTAACTCCCATTTACAATTCTCCTTGGCTTTGA 1494 0.4418 MTSHAENEALPVTVKFTKLFINGDFVDSVSGRTFETIDPRTGDVIASISEGTKEDIDIAVKAARQAFDSGPWPRLPGAERAKIMMKLADLIDENTEELAALDAIDAGKLYHMCKAMDIPGAAKTLRYFAGAADKIHGEVLKASRELHAYTLMEPVGVVGHIIPWNFPASFFFTKVSPALAAGCTMVLKPAEQTPLSALFCAHLAKLAGIPDGVLNVVPGFGSTAGAAVSSHMDIDAVSFTGSTQTGREVMKAAASSNLKRVSLELGGKSPLIIFNDADIDKAAELALYGILLNKGEVCVASSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKREGATLLTGGKSVGNKGYYIEPTIFSNVKEDMLIVQDEIFGPVMALKKFKTVEEAIKSANNTRYGLAAGIMTKNLDIANTVSRSIRAGSVWINCYFAIDNDIPFGGYKASGFGKDYGLEAIHKYLQVKSVVTPIYNSPWL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0173 497 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Lja4g0173 497 SUPERFAMILY ALDH-like 12 493 IPR016161 GO:0016491
Lja4g0173 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 456 IPR016163 GO:0016620
Lja4g0173 497 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 12 497 - -
Lja4g0173 497 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Lja4g0173 497 Pfam Aldehyde dehydrogenase family 25 487 IPR015590 GO:0016491
Lja4g0173 497 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 12 497 - -
Lja4g0173 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 485 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0173 Lja-Chr4 1374761 1380009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0173 14 497 Aldehyde Dehydrogenase Gene Family AT3G24503 71.134 0.0 735
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0173 4 1374761 1380009 Lja2g2042 2 22187990 22191800 PCT