Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0172 ATGAGTACTGATCTCTCTAGCTCCAATAATGGCCACGACACCACATTTGTCAAGATACCCACCATCAAGTTTACAAAGCTCTTCATCAATGGAGAATTTGTTGATTCCATATCAGGAGCTACATTTGAGACAATAGATCCTAGAACTGAGGAGGTGACGGCGAGAGTCTGCAAGGGAGCTAAAGAAGACATCGATGCTGCTGTTAAAGCGGCGCGTGAGGTGTTTGACCATGGTCCATGGCCTCGCTTGCCCGGCACTGGAAGAGCAAAACTTTTGATGAAATGGGCAGACCTAATTGAACAAAATGCAGAAGAAATAGCAGCATTAGAAGCGATTGATGGTGGCAGGCTGTACCATTTTGCTAAGAATTTTGAAATTTCTGCATCAGCAAGCACCCTGCGTTACTATGCAGGTGCTGCTGATAAAATTCATGGTGAGGTGTTCAAAACGTCCGGTGAGTTCCACGCTTATACACTGTTGGAACGAATTGGTGTTGTGGGGCACATTATTCCCTGGAATGCCCCCACTGCCTTGTTCTTCACCAAGGTTAGCCCTTCCTTAGCTGCAGGGTGCACCATGGTCCTCAAGCCTGCTGAACAAACACCTCTCACTGCTTTGTTTTGTGCTCATTTGGCTAAACTGGCTGGAATCCCAAATGGAGTGCTCAATGTAGTACCCGGATTTGGCTCAACTGCCGGTGCTGCAATAAGCTCACACATGGACATAGATAAGGTCAGCTTCACTGGTTCAGTTGAATCGGGTCGTAAAGTAATGCAGGCTGCAGCTTTGAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGCAAGTCACCTCTCATTATTTTCAAAGATGCTGATATAGACAAAGCTGCTGATCTAGCTCTCATAGGAATCTTGTATAACAAGGGAGAAGTTTGTGTCGCAAGTTCCCGCGTGTTCATTCAGGAAGGGATCTATGATGAATTTGAGAAGAAGTTGGTGGAGAAGGCAAAAGCTTGGGTCCTTGGGGACCCATTTGATCCTAAAACTCAGCAAGGACCTCAAGCTGACAGGAACAATTTTGAAAAAGTTCTATCCTATATTGAACATGGAAAGAGAGAAGGAGCCACCCTCTTAACAGGAGGCAAAGCAGTGGGCAGCAAGGGATACTACATTGAACCTACAATTTTCTCCAATGTAAAGGAGGACATGCTTATAGCACAGGATGAAATATTTGGCCCTGTCATGGTACTGATGAAGTTTAAGACTATTGAGGAAGCAATTAAGAGTGCCAACAATACCAAATATGGCTTAGCAGCTGGCATTGTGACCAAGAACTTGGATACTGCAAACACTGTATCGAGGTCCATCCGTGCAGGCATTGTTTGGATCAACTGCTACTTGACCTTAGACAGTGACATTCCTTTTGGAGGATACAAGATGAGCGGATTTGGAAAAGATTTGGGATTGGACGCCCTTCACAAGTACTTGCAAGTTAAATCTGTTGTCACACCTATTTACAATTCTCCTTGGCTCTAA 1518 0.446 MSTDLSSSNNGHDTTFVKIPTIKFTKLFINGEFVDSISGATFETIDPRTEEVTARVCKGAKEDIDAAVKAAREVFDHGPWPRLPGTGRAKLLMKWADLIEQNAEEIAALEAIDGGRLYHFAKNFEISASASTLRYYAGAADKIHGEVFKTSGEFHAYTLLERIGVVGHIIPWNAPTALFFTKVSPSLAAGCTMVLKPAEQTPLTALFCAHLAKLAGIPNGVLNVVPGFGSTAGAAISSHMDIDKVSFTGSVESGRKVMQAAALSNLKPVSLELGGKSPLIIFKDADIDKAADLALIGILYNKGEVCVASSRVFIQEGIYDEFEKKLVEKAKAWVLGDPFDPKTQQGPQADRNNFEKVLSYIEHGKREGATLLTGGKAVGSKGYYIEPTIFSNVKEDMLIAQDEIFGPVMVLMKFKTIEEAIKSANNTKYGLAAGIVTKNLDTANTVSRSIRAGIVWINCYLTLDSDIPFGGYKMSGFGKDLGLDALHKYLQVKSVVTPIYNSPWL* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0172 505 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 299 310 IPR016160 GO:0016491
Lja4g0172 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 29 493 IPR016162 GO:0016491
Lja4g0172 505 Pfam Aldehyde dehydrogenase family 34 495 IPR015590 GO:0016491
Lja4g0172 505 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 5 505 - -
Lja4g0172 505 SUPERFAMILY ALDH-like 16 501 IPR016161 GO:0016491
Lja4g0172 505 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 271 278 IPR029510 GO:0016491
Lja4g0172 505 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE RF2C 5 505 - -
Lja4g0172 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 275 464 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0172 Lja-Chr4 1359480 1364097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0172 15 505 Aldehyde Dehydrogenase Gene Family AT3G24503 69.309 0.0 719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0172 4 1359480 1364097 Lja2g2044 2 22220101 22230232 PCT