Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0171 ATGAAGAAGCAAGTTACAATACTCCTAGTCCTTTCTCTCATTCTAGCCACACTCTCCCTCACCCTGTGTGCCAATGCAGACGCAGTAGACCCATCTCTTGTTTTCGAGAATCCACGAATCAGAAACGCATACATCGCCTTGCAAGCTTGGAAGGACGCCATTCTTTCCGATCCTCTAAACTTCACCACCAACTGGGTCGGATCCAATGTCTGCAACTACAACGGCATTTACTGCACTCAAGCCCTCGACAATCCCAAGATCCGCACCGTCGCAGGCATTGACCTCAACCACGGTGACATTGCCGGATATCTCCCGGACGAGCTCGGCTTGCTCACAGATCTTGCGCTCTTCCATGTCAACTCCAACAGACTCTGTGGGACAGTTCCACAAACATTTGATAAGCTGAAGCTTCTCTTCGAGCTGGATCTCAGTAACAACCGCCTCGCCGGAAAGTTCCCTGAGGTGGTTCTCCGGCTACCCTCTCTCAAATTCTTGGACATCAGGTTCAATGAATTTGAAGGGAAGGTACCTAGAGAGCTGTTTGATAAGGATCTTGACGCTATTTTCATCAACGATAACCGTTTCGTTTTTGAACTCCCTGAAAATTTCGGAAACTCACCGGTTTCTGTTATTGTTCTGGCGAATAACAAGTTCCACGGTTGCATTCCGGCGAGCATAGGGAACATGTCGAACTTGAACGAGATTATTCTGATGAACAACGCGTTTAGTGCTTGTTTGCCATCGGAGATTGGGATGCTGAGAAACCTCACGGTGTTCGATGTGAGTATCAATCAGCTCGTGGGTCCGTTGCCGGCGACGGTGGGGAACTGTGTGAGCTTGGAGCAGTTGAACGTGGCGCACAATTTGTTTTCTGGGAAAATCCCTGCTAGCATTTGCATGCTGCCGAATCTTCAGAACTTCACTTATTCGAACAATTTCTTCACCGGCGAACCTCCGGCGTGTTTGGCGTTGTCGGCGTTTGACGACAAGAGGAACTGCTTGCCGGCGAGGCCGTTGCAGAGGACTCCGGCGGAATGTAGCTCCTTTTTGTCGAAGCCGGTGGATTGTAACTCGTTTGGGTGTAAACCGTTTCCAGGAGGGGGAGGAGGAGGAGGAGGAGGTTCACCTCTGCCACCGCCTGCGGTGGTTCCTTCACCTTCACCCCCGGGTGCTCCTGGCTTTACTCCGCCATCGCTGCCACCTGGTCAGTCTCCATCACTTTCTCCAGGTTCACCTCCATCGCTTTCTCCAGGTTCTCCTCCATCACCCGTTGTTGTGTCACCATCTCCGCAGCCACCGTGGTCCCCTACTCCAACTCCACCACATTCTGGTCAGACACCACCGCCAACTCATTCACCTCACGAGCCTCCGCCAACTCCTGATCATAGCTCATCGCCAAATTATTCACCTCACGCGCCACCTCCAACTCCTGAACATAGCTCATCGCCAAATTATTCACCTCACGCGCCACCGCCAACTCCTAATCATAGCTCCCCGCCAAATAATTCACCTCACGCGCCACCCCCAACTCCTAATCATAGCTCACCGCCAAATCATTCACCTCACTGGCAAACGCCGCCACCACCACCACCTTCTCCATATCATAGCTCACCGCCAACCCATTCACCTAACTCACCCCCGCCACCGCCTTCTCCATATCATACCTCACCGCCGGCGCCACCTGCCCATTCACCATCTCCTAGTATAGAACCTCCTCCACACCAATCACAACCATCTCCTGGAGAGCATTCACCTCCGCCCCCACCAGGGCCACAACTACCTCACCTGCCACCACCTTCCCCATCTCCCCTGCCCCCAGCAGGGCATGTTTCTCCCCCTCCACCAGTCCAATACTCTCCCCCATCACCGCCACCAGTTCAATTTACTTCTCCACCACCACCCCCTGTGCATCACGAGCCAAAAGCAAAGCAAAGAAACACACCAACCCCCAATTCACGATCTCATTCTGTTATTTCTTTTGAAAAAGAGAGTGAAACCGCCGAACCAAACAGTCATGAACTGACTCAGATCTGCTTCTTCTTCTTCTTCACCATTGCTTCCATCTTCTTCTTCTTCTTCTTCTTCTCTCTCAGGGGACTAGAGTATGACATCTCTGGTTGA 2121 0.5215 MKKQVTILLVLSLILATLSLTLCANADAVDPSLVFENPRIRNAYIALQAWKDAILSDPLNFTTNWVGSNVCNYNGIYCTQALDNPKIRTVAGIDLNHGDIAGYLPDELGLLTDLALFHVNSNRLCGTVPQTFDKLKLLFELDLSNNRLAGKFPEVVLRLPSLKFLDIRFNEFEGKVPRELFDKDLDAIFINDNRFVFELPENFGNSPVSVIVLANNKFHGCIPASIGNMSNLNEIILMNNAFSACLPSEIGMLRNLTVFDVSINQLVGPLPATVGNCVSLEQLNVAHNLFSGKIPASICMLPNLQNFTYSNNFFTGEPPACLALSAFDDKRNCLPARPLQRTPAECSSFLSKPVDCNSFGCKPFPGGGGGGGGGSPLPPPAVVPSPSPPGAPGFTPPSLPPGQSPSLSPGSPPSLSPGSPPSPVVVSPSPQPPWSPTPTPPHSGQTPPPTHSPHEPPPTPDHSSSPNYSPHAPPPTPEHSSSPNYSPHAPPPTPNHSSPPNNSPHAPPPTPNHSSPPNHSPHWQTPPPPPPSPYHSSPPTHSPNSPPPPPSPYHTSPPAPPAHSPSPSIEPPPHQSQPSPGEHSPPPPPGPQLPHLPPPSPSPLPPAGHVSPPPPVQYSPPSPPPVQFTSPPPPPVHHEPKAKQRNTPTPNSRSHSVISFEKESETAEPNSHELTQICFFFFFTIASIFFFFFFFSLRGLEYDISG* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0171 706 Pfam Leucine rich repeat N-terminal domain 46 78 IPR013210 -
Lja4g0171 706 PANTHER LRR EXTENSIN-LIKE PROTEIN 1 638 - -
Lja4g0171 706 MobiDBLite consensus disorder prediction 370 669 - -
Lja4g0171 706 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 638 - -
Lja4g0171 706 MobiDBLite consensus disorder prediction 377 637 - -
Lja4g0171 706 Pfam Leucine rich repeat 115 171 IPR001611 GO:0005515
Lja4g0171 706 Gene3D Ribonuclease Inhibitor 207 340 IPR032675 -
Lja4g0171 706 Gene3D Ribonuclease Inhibitor 44 206 IPR032675 -
Lja4g0171 706 PRINTS Proline rich extensin signature 389 410 - -
Lja4g0171 706 PRINTS Proline rich extensin signature 417 433 - -
Lja4g0171 706 PRINTS Proline rich extensin signature 445 462 - -
Lja4g0171 706 PRINTS Proline rich extensin signature 377 389 - -
Lja4g0171 706 SUPERFAMILY L domain-like 43 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0171 Lja-Chr4 1342006 1350085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0171 28 361 Leucine-rich Repeat extension Gene Families AT3G24480 77.015 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0171 - - gmx:100782090 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0171 4 1342006 1350085 Lja4g0171 4 1342006 1350085 ECH