Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0168 ATGACTAGTCGACTCAAGGAAGATGAGAAAAACGAACGAAAGATACGAGGTCTTCTCAAACTTACACCAAATCGTAGATGTGTTAACTGCAACAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACACCGAGAATTTACACATCGAGTAAAATCAGTTTCAATGGCAAAATTTACTGCACAAGAAGTTAGCGCACTTCAAGAAGGAGGAAATCAGCATGCAAAAGAAATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCCATAATGTTGACAGGCTCCGGGAGTTTATTAAGCACATTTATGTGGATAGGAGATTCACTGGTGAGAGAACCTATGACAAACCTCCAAGAAGTGACAAGGATGATTCCTATGAAAACAGGAGGATTGAGACATACCAGGGAGGACCTAAAAGCCCTCCATATGAAGACACAGATGAACGTCGTTACCCTGACAGGTCTAGTCCCGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAGGCAATATGATTACAAGAGAAGCCCTGGTCGTCCTCCAGTAATCAATGATTGGCGCCGTGAAGATAGATTTAGAGATGGACGGAAATTCGAAAATCATAGACTATCTGATGGAGATAATAAGGTGGAAAGCCAATCTCCTGAGCAAGCCCAAGAACAAGATTCTTCAAGCCCACCCGTAGGTCGACCTGTTAGAGATATTTTGGGAGATAATGTAGTAGCTCCTCGAATCAGTGGACCCCCCAAAACAAACAATGGACAGGCTGCTAATGGATCAGCACTCTCGCAGAGAACTGCATCTTCCAGTAGCTTGGCATCCAGCAACGGAACCCCAGCAGAAGTTAAGATTGAAACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGCTGCTCCAGCAATTCCTCAAGCCCAACAAACTACTGTGGCTCAACTTATGATGCCAGCAAATTCCAGTGATAATAATTGGGCCTCCTTTGATGTTGCTCCTGAGGTAAAAGTATCTCAGGGTCCTTCAAATGTAAATCCACTTGAATCTGTGCTGTCCCAATTGTCAGTACCAGCATCTTTACCTGGTCATACTTCTGGAGTCCAAGGGCCTGTGACAGGATCAACTCTTAGTGCTACTGCTGCTGGAGCTCCAACTGTTATCAGCTTCTCTACATTCCCAGCTAATGGTGTGTCAGTAACATCTCATGCATCACTTCTCAATGATGCAGGACTGCAAGCCAGTTTGCAGTATCAACAACCTTTGTTCACCACTAATGCTAGTCAGCCCATTATTCAACAATCTACGCTGCCAGTAGGTGGAGCTTTGAATAATCAGCCGTGGCATATACCTTCTGTACCCACAGTACAGGGGTATCCAAGTGCACCATTGCCACATGCATCTCATCATATCTCAAACGCAAAGTCGGTCAATCAGGATACACCCAGTGTTGTTTCACAATCTTCTACTGTAGACATAAAACCAAGTGGGAGGAATGAACTTCCTCAGGATCTATTCTCTATGAATTATTCATCCTTTCCTGCTCCAGCTCCAGGTTGGCAAATGGGTCCACCACATGGCATGGGTATCTCAGTTCAACATAATAATTTGGTGCCCATGCCAAGTTTACCGCTGCCATCGAAGTCAATGAATCCATTTGATGTCAGCAACGAACCAACTCCAGTTCAAGCCCCAACTTTTCCTTCCATGTCATCTTTACAAGGTGCTCTGCCTAGTGTAACACCTTCAGCCACATTGCACCCTTCAAACATGGGTAATCTATCTATTCCCTGGAATCCGCCGTCATCATCATCATATGTATCAGTGCTTCCTCCACAAGCACAAACTCTTTCATCAACAATGGGACCAAGGGCACACATGGGGCAACATATGCCAAATAATGTTCCAATGCCAAGGCATCAAGGATTTGGGAGCTTTGGAAATGATGGTGCTGCATTTGGTTTCTCAAGTCCAGATCAGCACCTGACTAGTAGGTTGTCAACCCCTGCTACCTCAAACCCCTTTCCTGCAGTAGGAGGAAACCCATTTGGATGA 2097 0.4435 MTSRLKEDEKNERKIRGLLKLTPNRRCVNCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTAQEVSALQEGGNQHAKEIYFKEWDPQRHSLPDSHNVDRLREFIKHIYVDRRFTGERTYDKPPRSDKDDSYENRRIETYQGGPKSPPYEDTDERRYPDRSSPGGRSPGYDQENRQYDYKRSPGRPPVINDWRREDRFRDGRKFENHRLSDGDNKVESQSPEQAQEQDSSSPPVGRPVRDILGDNVVAPRISGPPKTNNGQAANGSALSQRTASSSSLASSNGTPAEVKIETIKSLIDFDDDPEPPAAPAIPQAQQTTVAQLMMPANSSDNNWASFDVAPEVKVSQGPSNVNPLESVLSQLSVPASLPGHTSGVQGPVTGSTLSATAAGAPTVISFSTFPANGVSVTSHASLLNDAGLQASLQYQQPLFTTNASQPIIQQSTLPVGGALNNQPWHIPSVPTVQGYPSAPLPHASHHISNAKSVNQDTPSVVSQSSTVDIKPSGRNELPQDLFSMNYSSFPAPAPGWQMGPPHGMGISVQHNNLVPMPSLPLPSKSMNPFDVSNEPTPVQAPTFPSMSSLQGALPSVTPSATLHPSNMGNLSIPWNPPSSSSYVSVLPPQAQTLSSTMGPRAHMGQHMPNNVPMPRHQGFGSFGNDGAAFGFSSPDQHLTSRLSTPATSNPFPAVGGNPFG* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0168 698 PANTHER ARF GTPASE ACTIVATOR 1 698 - -
Lja4g0168 698 MobiDBLite consensus disorder prediction 125 144 - -
Lja4g0168 698 MobiDBLite consensus disorder prediction 125 294 - -
Lja4g0168 698 CDD ArfGap_AGFG 12 122 - -
Lja4g0168 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Lja4g0168 698 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Lja4g0168 698 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Lja4g0168 698 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Lja4g0168 698 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Lja4g0168 698 MobiDBLite consensus disorder prediction 671 689 - -
Lja4g0168 698 MobiDBLite consensus disorder prediction 260 294 - -
Lja4g0168 698 MobiDBLite consensus disorder prediction 630 698 - -
Lja4g0168 698 PANTHER ARFGAP/RECO-RELATED 1 698 IPR044820 GO:0005096
Lja4g0168 698 MobiDBLite consensus disorder prediction 195 223 - -
Lja4g0168 698 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Lja4g0168 698 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Lja4g0168 698 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Lja4g0168 698 MobiDBLite consensus disorder prediction 224 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0168 Lja-Chr4 1312611 1319349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0168 12 122 C2H2 Transcription Factor Family AT4G21160 33.333 1.95e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0168 - - gmx:100815114 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0168 4 1312611 1319349 Lja4g0168 4 1312611 1319349 ECH