Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0166 ATGACTGAAACTAAGTCAACTGGTAAGATTATTAAAAAACAAGATACAAAAAAGGTTTCTAGTCTCAGCCATCAGCCCTCCAGGAAGCAACATCGGAAGGGTGAAAACCCCACACGTCTCGTACCTCCTCCTGATCAATCTTCTGATTTTGGACATTCAAACACTTGGGTCTGTAAAAATGCTGCTTGTAGAGCAGTTTTATCTATAGATGATGCGTTTTGTAGACGATGCTCTTGCTGTATTTGTCACCTTTTTGACGATAACAAGGATCCTAGTCTTTGGTTGGTTTGCACATCTGAATATGCTCAAGGGGACTCGTGCGGGTTGTCTTGCCATATCGAGTGTGGCCTTCAACATGAAAAAGTGGGAGTTATTGATAATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTCACAGGGATACTTGAATGCTGGAAGAAGCAGCTAAGTTTAGCAAAAGATGCCCGCCGTGTAGATGTACTTTGTTATAGGATATATTTGAGTTACAGGCTCTTGGATGGAACTTCGAAATACAAAGACTTGCATCAAATAGTACAAGAGGCAAAGACTAAATTGGAGACAGAAGTTGGTCCTGTTAATGGGGTTTCTGCCAAGATGGCACGAGGCATTGTCAGCAGACTGCCTATTGCCGGTGATGTACAGAAACTCTGCTCTCTTGCTATTGAAAAAGCTGATTGCTGGCTGGCCATTGCTCCAACTGTAAATCCAGATTACAGAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGACAACAGCCTCATCCGTCACAATCATTCTAATTGAAATGTCAAATGTATGCTCTGAGGAAATCAAGGGGTACAAGTTGTGGTATCACAAGAGTAGGGATGAATCACATTCAAAAGATCCTGTTTCTGTGTTTCCTAAATCTCAGAGGAGGATTTTGATATCTAACCTTCAGTCCTGCACAGAATATACTTTTCGGATCATATCCTATACTGAAACAGGTGACCTTGGTCATTCGGAGGCTAAGTGTTTTACGAAGAGCGTCGAGATAATTCAAAACAATCCATCTTCATCTGTTGCTATGAATCTAAAGAAAGAGAACCTTCAAACAGGGGGCAATTCTTCTGGCTCCAGGAAGGAGTTCAATCCCACAATAAATGGTACTGGATTTAAAGTTCGAGACCTTGGGAGATTTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTCACCTTGAAAAGCTTTGCTGTGCTGATATTAAAAAATGCTGTGCACAAAGTGAAATGAACAAGCCAAAAATTCCAGAAGCACAGTTGCCTTCAGATTCACGAGGCCTTGATTTAAATGTTGTTTCAGTGCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTGCTGCAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTTGCACGATCACATGGGAGTGGTGGCTCCCAAACCTGGGTGCACGGGCCAACTGGTGAAGTTTCAACTGTCGACTCTCGCGCAAATATATGCAGGAAAAGGATAGCGAGCACAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGTTCTCCTGTACGCATTTCCGATGTTTCATACTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAGCAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTCTACGGTCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTTATTCAAACTCTAATAGATGATCCAAGTAGTTTGGCAGGGCAACTTGTTGACTCTTTTTCTGACATTATATCCAGCAAGAGACCAAGAAATGGATTCTGTAGTAAAGCTGTTGCATCAAATTAA 1953 0.4188 MTETKSTGKIIKKQDTKKVSSLSHQPSRKQHRKGENPTRLVPPPDQSSDFGHSNTWVCKNAACRAVLSIDDAFCRRCSCCICHLFDDNKDPSLWLVCTSEYAQGDSCGLSCHIECGLQHEKVGVIDNGQLMQLDGGYCCASCGKVTGILECWKKQLSLAKDARRVDVLCYRIYLSYRLLDGTSKYKDLHQIVQEAKTKLETEVGPVNGVSAKMARGIVSRLPIAGDVQKLCSLAIEKADCWLAIAPTVNPDYREGSLPAACKFVFEETTASSVTIILIEMSNVCSEEIKGYKLWYHKSRDESHSKDPVSVFPKSQRRILISNLQSCTEYTFRIISYTETGDLGHSEAKCFTKSVEIIQNNPSSSVAMNLKKENLQTGGNSSGSRKEFNPTINGTGFKVRDLGRFLRLAWAQEQGHLEKLCCADIKKCCAQSEMNKPKIPEAQLPSDSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLLQAVEADDDAASHDLEKNGFARSHGSGGSQTWVHGPTGEVSTVDSRANICRKRIASTNEETHDCDSTLINGSPVRISDVSYSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISSKRPRNGFCSKAVASN* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0166 650 MobiDBLite consensus disorder prediction 499 518 - -
Lja4g0166 650 CDD PHD_VIN3_plant 78 142 - -
Lja4g0166 650 Gene3D Immunoglobulins 258 355 IPR013783 -
Lja4g0166 650 ProSiteProfiles Fibronectin type-III domain profile. 257 356 IPR003961 GO:0005515
Lja4g0166 650 Pfam Fibronectin type III domain 263 343 IPR003961 GO:0005515
Lja4g0166 650 MobiDBLite consensus disorder prediction 503 518 - -
Lja4g0166 650 MobiDBLite consensus disorder prediction 1 50 - -
Lja4g0166 650 PANTHER VIN3-LIKE PROTEIN 1 4 646 - -
Lja4g0166 650 MobiDBLite consensus disorder prediction 1 19 - -
Lja4g0166 650 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Lja4g0166 650 PANTHER VIN3-LIKE PROTEIN 2-RELATED 4 646 IPR044514 GO:0010048|GO:0040029
Lja4g0166 650 CDD FN3 262 341 IPR003961 GO:0005515
Lja4g0166 650 SUPERFAMILY Fibronectin type III 263 341 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0166 Lja-Chr4 1288895 1295276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0166 54 641 PHD Gene Family AT3G24440 48.997 4.80e-180 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0166 - - gmx:100815645 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0166 4 1288895 1295276 Lja4g0166 4 1288895 1295276 ECH
Lja4g0166 4 1288895 1295276 Lja2g2057 2 22558907 22568263 PCT