Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0148 ATGACCTCAGACATGAGAGGTGCAGGTGCCTTGGGAGCCAAGACAGCAAGAGCCTGTGATAGCTGCCTCCGCCGGAGAGCACGGTGGTTCTGTGGAGCAGATGATGCATTCCTCTGCCATGGCTGTGACACTTTGGTTCACTCTGCAAACCAATTAGCTAGCAGGCATGAAAGGGTGAGGCTTCAGTCTGCTTCCTCTAAGGTAACCACCACACAAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCAGAAAAACCATAACTTGGCGCTGCAACAACGCTTCAAAGAAAAAGTGCTCTTCAACAACACAAGCAGTGTTGTTCTTCCCCTTGTGCCAGAGCTTGGAGGTGAAGAACAAGAACAATTGGTGGATGATGATGAGTCTGAGGAGCAGCTTCTATTTCGCGTGCCTGTGTTTGAGCCCTTTGATGGAGAGCCTTGCATCAAAGAGCTCAAATACAATACGCAAAATGATGCTGCTGATGATGAAGAAGCTTGTAACTTGGAGAGTTTTTGTGATTTTGATGTGGATCTTGCTGAGTTTGCAGCTAGTGTTCAGAGCCTACTTGGGAATGGGGTTCATGAGGATTTAGGTGAAGTGTTTAATTATACAAAAGAAGATGAAATAGCAGCATATGTAATAGGAGATGCAGCTACAAGTGAAAAAGCAAAGGTTAAGGATGAAGAACTGGACACTGCTGATACTAATAGAGGTTGTCATTTGGAGTCAGTTCTTGACATAACAAGTAATGAGGCCTTTGAATGGAACATTGACTCAATGTTACAGGAAGAGAAGGAGGCTGTGGTGGCTAGTAATAGTGGTGAAAGGGAAGAGGGAACAAAGAGAGACATGTTTTTGAGACTAAACTATGAGGAGGTTATAACTGCTTGGGCTAGCCAAGGTTCTCCATGGACAACTGGAAACCCTCCTAAGTTCAACTCTGATGAGGACTTCTTGCCAAATTGCATGGGCTTGAGTGGTGCAGATGAGGAATATAGGAACTTAAGAGGGCACATTGTAGGGAGGGGAGATGAGGGAAGAGAAGCAAGAGTGTTGAGGTACAGAGAGAAAAGAAGAACTCGTTTATTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAATGCAGAGAAGAGACCAAGATTGAAAGGCCGTTTTGTCAAGAGGACATGCCTTGTTGGAGCCACTTCTTCTTTTCCAGCTTACCACTGA 1224 0.451 MTSDMRGAGALGAKTARACDSCLRRRARWFCGADDAFLCHGCDTLVHSANQLASRHERVRLQSASSKVTTTQAWHSGFTRKARTPRQKNHNLALQQRFKEKVLFNNTSSVVLPLVPELGGEEQEQLVDDDESEEQLLFRVPVFEPFDGEPCIKELKYNTQNDAADDEEACNLESFCDFDVDLAEFAASVQSLLGNGVHEDLGEVFNYTKEDEIAAYVIGDAATSEKAKVKDEELDTADTNRGCHLESVLDITSNEAFEWNIDSMLQEEKEAVVASNSGEREEGTKRDMFLRLNYEEVITAWASQGSPWTTGNPPKFNSDEDFLPNCMGLSGADEEYRNLRGHIVGRGDEGREARVLRYREKRRTRLFAKKIRYEVRKLNAEKRPRLKGRFVKRTCLVGATSSFPAYH* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0148 407 CDD Bbox1_BBX-like 18 61 - -
Lja4g0148 407 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515
Lja4g0148 407 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Lja4g0148 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 399 - -
Lja4g0148 407 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lja4g0148 407 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lja4g0148 407 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 399 - -
Lja4g0148 407 Pfam CCT motif 351 393 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0148 Lja-Chr4 1117668 1119383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0148 8 396 C2C2-CO-like Transcription Factor Family AT1G68520 41.943 4.21e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja4g0148 zf-B_box 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0148 - - gmx:100812563 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0148 4 1117668 1119383 Lja2g2090 2 23108845 23111827 PCT