Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0141 ATGGCTGAATTCACTGCAGATTGGCAAAGTCTTAGACCCTCATCATTTCCTTTCTTAGATATTGATAACATGGAACTACTAAATCATCTCAAAGGGGTGAATTCACATACCTTGGACAACTCAATTTTGAACATGCAGAACTTGATGCAATTCTCCAGTGGCAGCTTCTTTTGCTCCTCAGAACCAGAATTTCAAGGAAACTTGGAAGAAAATATGCCAGGCCTTGTGCATCATTTCAATCAAAATGCAGCTCCAGTTTCACCACCTATTTCTTCAGTAGAAAATGAAGGTAGAAAGAGGAAAGCAACCAACATGAGTGGACCTAGTTCTGCAAATTCAACCCCTTCAGTTTCTGAGAGTGAAAGCAAGATCAAAAATTGCTCTGGAAGAGGCAAGAGAGTAAAAAAGAACATGATGGAAGAGGAAGACAAGAAATCAACACAAGTAGTTCATGTTAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGTAAAATCAATGAAAAACTTAAGTGCTTGCAAAACATTGTCCCAGGATGTTACAAGACTATGGGTATGGCAATAATGTTGGATGAGATCATAAACTATGTCCAGTCCTTGCAACATCAAGTGGAGTTCCTCTCTATGAAGCTCACTGCAGCAAGCACCTTTTATGACTTCAATTCAGAGATAAATTCTTTAGAGGCAATGCAGAGAGCAAGGGTATCCGAGGCAAAAGAGTTGGCAAAGTACGTGACAGAAGGATATGAAGGAGTTTCTTGCTTTCAACCAACTTGGCCTTAA 807 0.4002 MAEFTADWQSLRPSSFPFLDIDNMELLNHLKGVNSHTLDNSILNMQNLMQFSSGSFFCSSEPEFQGNLEENMPGLVHHFNQNAAPVSPPISSVENEGRKRKATNMSGPSSANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSEINSLEAMQRARVSEAKELAKYVTEGYEGVSCFQPTWP* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0141 268 MobiDBLite consensus disorder prediction 102 124 - -
Lja4g0141 268 MobiDBLite consensus disorder prediction 125 164 - -
Lja4g0141 268 CDD bHLH_AtBPE_like 149 231 - -
Lja4g0141 268 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Lja4g0141 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983
Lja4g0141 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 226 IPR036638 GO:0046983
Lja4g0141 268 MobiDBLite consensus disorder prediction 83 164 - -
Lja4g0141 268 Gene3D - 158 220 IPR036638 GO:0046983
Lja4g0141 268 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 267 IPR024097 GO:0006355
Lja4g0141 268 SMART finulus 164 214 IPR011598 GO:0046983
Lja4g0141 268 PANTHER TRANSCRIPTION FACTOR BEE 1 2 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0141 Lja-Chr4 1072015 1073684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0141 91 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 57.143 2.72e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g0141 HLH 9.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0141 - - aprc:113855800 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2103 2 23295955 23297814 Lja4g0141 4 1072015 1073684 ECH
Lja4g0141 4 1072015 1073684 Lja4g0141 4 1072015 1073684 ECH