Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0140 ATGTCTTCTTCAAAGAGCATTGCTAGCAGTTCTAGTGAAGATGATAATAATGAACTTAGAAGAGGGCCTTGGACTATTGAGGAGGATAATATGCTCACCCAACACATTACTAATCATGGGGAAGGGCGTTGGAATTTGCTTGCTAAACGTTCAGGATTAAAGAGAACAGGGAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTAAAAAGGGGAAATTTAACACCAGAAGAGCAGCTTTTGATTCTTGAACTCCACTCTAGGTGGGGAAACAGGTGGTCACAAATTGCACAGCATTTGCCAGGCAGGACAGACAATGAAATCAAGAACTACTGGAGAACCCGGATTCAGAAACAAGCAAGGCATTTGAAAATTGACACAGATAGCAAGGAGTTTCAAGCACTTATTAGGCGTTTGTGGATGCCAAAATTGCTTCAGAAAGCAAAAGAATCATCTTCTTCAGCCATGTCCATAATCCAAAACCAGGATATTCCTTTGCCTCCTGATAGTGTTTCTCAGTATTCAACAATACCAACACCAATCCCTTGGGAGGGACCTTGTATGAATGAAGCAGGTCCCAGTTATTTGGATCAACATGAGCACAACAATGGTTCATGCAAATCCTTTTCCGAGTCAGCAAATATCCCAAAGGTGCCTCAGCAATTGGGATATACAACTAATCAATTTCATGCCTTAGATAACAATGACTTTGACACATTCACATATGATGGCTTTGAGATGGATACCTTCAAAATGGGAGCTGTAAAAGTAACTGAGGATGTGCAATTCTCAGTTGGTGATTGTCACATGGCAGAAAGCAATTGGGTACACAATGATTTTGCATGTGGCATGTGGAACATGGATGAATTGTGGCAATTTAGAAACTTGCAATAA 903 0.4031 MSSSKSIASSSSEDDNNELRRGPWTIEEDNMLTQHITNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPEEQLLILELHSRWGNRWSQIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTDSKEFQALIRRLWMPKLLQKAKESSSSAMSIIQNQDIPLPPDSVSQYSTIPTPIPWEGPCMNEAGPSYLDQHEHNNGSCKSFSESANIPKVPQQLGYTTNQFHALDNNDFDTFTYDGFEMDTFKMGAVKVTEDVQFSVGDCHMAESNWVHNDFACGMWNMDELWQFRNLQ* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0140 300 SMART sant 73 121 IPR001005 -
Lja4g0140 300 SMART sant 20 70 IPR001005 -
Lja4g0140 300 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Lja4g0140 300 CDD SANT 78 117 IPR001005 -
Lja4g0140 300 Gene3D - 77 120 - -
Lja4g0140 300 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Lja4g0140 300 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Lja4g0140 300 Gene3D - 21 73 - -
Lja4g0140 300 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Lja4g0140 300 MobiDBLite consensus disorder prediction 1 23 - -
Lja4g0140 300 PANTHER OS01G0128000 PROTEIN 6 295 - -
Lja4g0140 300 CDD SANT 23 68 IPR001005 -
Lja4g0140 300 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 6 295 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja4g0140 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Lja4g0140 300 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Lja4g0140 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0140 Lja-Chr4 1064425 1065911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0140 16 297 MYB Transcription Factor Family AT1G68320 43.960 1.15e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g0140 Myb_DNA-binding 8.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0140 K09422 - gmx:778045 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0140 4 1064425 1065911 Lja4g0140 4 1064425 1065911 ECH