Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0139 ATGTACACATCAAGGAAGAAAATCCACAAAGATAAGGATGCTGAGCCTACTGAATTTGAGGAAACAGTTGGGCAGGCATTGTTTGATCTGGAAAATACCCATCAGGAGCTTAAAAGTGATTTGAAGGATTTATACATCAATTCAGCAGTACAAGTTGATGTTTCTGGGAACCGCAAGGCTGTTGTTATCCATGTGCCGTACAGATTGAGGAAAGCTTTCAGGAAGGTTCATGTTAAGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAATTTTGATTGCCACTCGGAGGATATTGAGGCCACCAAAGAAAGGTTCAGCTGCTCAACGTCCCCGCACCCGTACCCTCACCGCTGTTCATGAAGCAATGCTGGAGGATGTCGTATTGCCTGCTGAGATTGTTGGGAAACGTGTGAGGTATCGAGTTGATGGATCCAAGATTATGAAGGTTTTCTTGGACCCAAAGGAACGAAACAACACTGAGTACAAGCTGGAGACTTTTGCCGCAGTGTACAGGAAGCTGTCTGGCAAAGATGTTGTGTTTGAGTATCCCATCACAGAGGCTTAG 576 0.4497 MYTSRKKIHKDKDAEPTEFEETVGQALFDLENTHQELKSDLKDLYINSAVQVDVSGNRKAVVIHVPYRLRKAFRKVHVKLVRELEKKFSGKDVILIATRRILRPPKKGSAAQRPRTRTLTAVHEAMLEDVVLPAEIVGKRVRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPITEA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0139 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Lja4g0139 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
Lja4g0139 191 Coils Coil 27 47 - -
Lja4g0139 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Lja4g0139 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0139 Lja-Chr4 1060439 1062828 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0139 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 78.534 3.06e-114 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0139 K02993 - gmx:100527680 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2105 2 23314937 23317539 Lja4g0139 4 1060439 1062828 ECH
Lja4g0139 4 1060439 1062828 Lja4g0139 4 1060439 1062828 ECH