Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0138 ATGAGTTACCAAGATTCTCTACGACTCTTCATATCAAGGGCCTTTAAACCAAACACTCCCGTGGGAGGTTATGCGGACTTGGTAGAAGAGGTATTAAAATATGCTAAAGGGGTTCCATTAGCTCTCCAAGTTTTAGGCTCGCTGCTTTATGATAAAGAAAGGGAAGTATGGAAAAGTCTACTGCAAAAGCTGCGAAAGCTTCCCAATCGTCAAATTATCAATGTGTTGAAATTAAGTTATGATGGGCTGGATGATGAAGAGAAGAACATATTTCTTGACATTGCCTGCTTCTATGTAGGCTGGGATGAGGATGCAGTAGTGGCTCTCATAGATGCTTTTGGTTTCGCTGCTAAAGTTGGAATGGATGTTCTCAAAGATAGGGGCCTGATATCTATTTTGGGAGATAAAGTCATGGTGCATGATCTAATTCAGGAAATGGGAATGGATATTGTTCATCAAGAATGTGCCAATGATCCTGGAAAACGTAGTCGTTTATGGAACCATGAAGAAATTTGCACTGTATTAAAAAAGGACAAGGGGACAAATGCAATTCAGTGTATATACCTTGACATGGGCACGGAAACCTTTGTTCAACTACATCCTCAGATTTTTAAAAGCATGCCTAATCTGAGAATGCTTTGTTTTCATAAGGGATATTTTTCTGAGCAAATTCAATCAAATGTGACCCTTTTTGGACTTCTTGAAAGTCTTCCGGATGGTTTAAAATATCTTCATTGGCATGGATTTCCTCAAAGATCCTTGCCGCTTTGTCTTGAAAATATTGTTCAACTTGATATGCCTCATAGCGAGCTTGAACAACTTTGGGAGGATGATCAGGTAGTTCAACTTACGAGTTTAAATGTTCCTAGCAATATTCTATCGAAATCTTGTGGAAAAGTGGGGCTCGATAATTGTCGCAAGCTCAAAACGTTTTCAATCAAAAGAACTTGTACGGAAACAGAGGTATTAAAAGATGATGGGCCCTCACGATATTTCAAGCGTACGAAGTTGTCTCTGAGTGGTTGCTCAAATTTGAAAACTTTTCCTGAAATTGACAACACAATGGAAAATTTAGCGGTGCTTGAATTAGACCAAACAGCAATACAAGAACTACCTTCATCCCTTCACTGTTTGGTGGGGCTTGAAAAACTGATCTTGCAAGGTTGCCCAAGGCTTGAGATCATTCCCTGTTCCATTGGAAGCCTCACCAGACTCTGGAATTTAGACTTTAGCTGCTGTGAATCACTTGAAACTTTTCCAAGCACCATTTTCAAATTGAAGTTGGAAGCACTCAATTTTAGAGGTTGCTTAAAGCTAAACACCTTCCCAGAGATCTTGGAGCCTGCAAAAAGTTGTACTTTCATTAACTTAGCAGGAACAGCAATTAAACAACTGCCTTCATCTTTGGACTTCTTGGTGGCTCTTAAAACCTTGTCTCTGAGATTTTGCCAGGATCTGGAGTCACTTCCCAACAGCATTTGCAATCTAAAGCGTCTCTCTGAGCTTGATTGTTCAAGTTGTGGTAAATTAACCGAAATCCCAAATGACATAGGCTGCTTGTCATCATTAAGGAACTTGATTCTGAAGAATACCGGAATTGTGAACCTCCCAGAGAGTATTGCTTATCTTTCAAGCTTGGAATCACTTAATGTAAGTTATACCAAAATTGTGAACCTCCCAGAGAGTATTGCTCGTCTTTCAAGCTTGGAATCACTTAATGTAAGTTATACCAGAATTGTGAACCTCCCCGAGAGTATTGCTCATCTTTCAACCTTGGAATCACTTAATGTAAGTTATACCGAAATTGTGAACCTTCCAGAGAGTATTGCTCAACTTTCAAGCTTGAAATCACTTAATATCAGTGGTTGCAGAAAGGTTGAATGTATCCCACAACTTCCACCATTTCTGAAAGAGTTATTGGCAATTGATTGCCCATTTATTAGAAGAGTGATTTTTAATTCAACCTTCAAACACCCGTCAGATTCCAAAAAAGGCACCTTCCAATTTCATTTCACCAGTAATGAAAAACAGTATCCAAGTGCTAGTAGTGATGTTGTGTCTGATGCAAGGCTTCGGATCAGTGAAGATGCATATAGATTTGTGTACTATTTGTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTATCGTTCCAATGGAAATTCGGTAACTGTGGATAAAGATTCTCTAAATTGGTGCAATGATAACAGGCTCATCGGTTTTTCTATGTGTCTCGTTTTGCAACTGAAAGATACAAGATATGGTCCTTTTCAATGCAGAATAACATTTAAATCTGATGGCCGCACATACACCCTTCCCCAGGAAGCCCAGCTTAGAAACTCTTTCTCTTTCAGTGCTCAACAAATGGGACAGAGAGATCACACATTCCTATGGAAATCTTACTTAACGAAGTCGGTCCACAAAGGGATCTTTCATGCCTCCAGCTTCACTTTTAGGAACACATATAGGCTGTATTCTGAAACAAGTTATTTGGTGAAAGAGTGTGGAATATGCCCCCTTTATACCAAAAGAAAAATATGA 2541 0.3935 MSYQDSLRLFISRAFKPNTPVGGYADLVEEVLKYAKGVPLALQVLGSLLYDKEREVWKSLLQKLRKLPNRQIINVLKLSYDGLDDEEKNIFLDIACFYVGWDEDAVVALIDAFGFAAKVGMDVLKDRGLISILGDKVMVHDLIQEMGMDIVHQECANDPGKRSRLWNHEEICTVLKKDKGTNAIQCIYLDMGTETFVQLHPQIFKSMPNLRMLCFHKGYFSEQIQSNVTLFGLLESLPDGLKYLHWHGFPQRSLPLCLENIVQLDMPHSELEQLWEDDQVVQLTSLNVPSNILSKSCGKVGLDNCRKLKTFSIKRTCTETEVLKDDGPSRYFKRTKLSLSGCSNLKTFPEIDNTMENLAVLELDQTAIQELPSSLHCLVGLEKLILQGCPRLEIIPCSIGSLTRLWNLDFSCCESLETFPSTIFKLKLEALNFRGCLKLNTFPEILEPAKSCTFINLAGTAIKQLPSSLDFLVALKTLSLRFCQDLESLPNSICNLKRLSELDCSSCGKLTEIPNDIGCLSSLRNLILKNTGIVNLPESIAYLSSLESLNVSYTKIVNLPESIARLSSLESLNVSYTRIVNLPESIAHLSTLESLNVSYTEIVNLPESIAQLSSLKSLNISGCRKVECIPQLPPFLKELLAIDCPFIRRVIFNSTFKHPSDSKKGTFQFHFTSNEKQYPSASSDVVSDARLRISEDAYRFVYYLFPGSAVPHWFPYRSNGNSVTVDKDSLNWCNDNRLIGFSMCLVLQLKDTRYGPFQCRITFKSDGRTYTLPQEAQLRNSFSFSAQQMGQRDHTFLWKSYLTKSVHKGIFHASSFTFRNTYRLYSETSYLVKECGICPLYTKRKI* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0138 846 Gene3D - 1 84 IPR042197 -
Lja4g0138 846 SUPERFAMILY RNI-like 428 646 - -
Lja4g0138 846 PRINTS Disease resistance protein signature 610 626 - -
Lja4g0138 846 PRINTS Disease resistance protein signature 35 49 - -
Lja4g0138 846 Gene3D Ribonuclease Inhibitor 170 321 IPR032675 -
Lja4g0138 846 Pfam Leucine rich repeat 522 579 IPR001611 GO:0005515
Lja4g0138 846 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 542 IPR044974 GO:0006952
Lja4g0138 846 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 506 646 IPR044974 GO:0006952
Lja4g0138 846 Gene3D Ribonuclease Inhibitor 322 437 IPR032675 -
Lja4g0138 846 Gene3D Ribonuclease Inhibitor 438 649 IPR032675 -
Lja4g0138 846 SMART LRR_bac_2 612 632 - -
Lja4g0138 846 SMART LRR_bac_2 589 608 - -
Lja4g0138 846 SMART LRR_bac_2 543 562 - -
Lja4g0138 846 SMART LRR_bac_2 566 585 - -
Lja4g0138 846 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)-RELATED 2 542 - -
Lja4g0138 846 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)-RELATED 506 646 - -
Lja4g0138 846 SMART LRR_typ_2 566 588 IPR003591 -
Lja4g0138 846 SMART LRR_typ_2 589 612 IPR003591 -
Lja4g0138 846 SMART LRR_typ_2 543 565 IPR003591 -
Lja4g0138 846 SMART LRR_typ_2 472 496 IPR003591 -
Lja4g0138 846 SMART LRR_typ_2 355 377 IPR003591 -
Lja4g0138 846 SUPERFAMILY "Winged helix" DNA-binding domain 71 176 IPR036390 -
Lja4g0138 846 Pfam C-JID domain 705 843 IPR045344 -
Lja4g0138 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 94 IPR027417 -
Lja4g0138 846 SUPERFAMILY L domain-like 182 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0138 Lja-Chr4 1055134 1060370 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0138 472 664 WRKY Transcription Factor Family AT4G12020 30.088 6.24e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0138 - - lja:Lj3g3v0423790.1 915.22