Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0134 ATGGCGACGCCTTTGGACGGAGGAGGAGGAGTGACGGTGCTGTCAAATTCCGTCAACAACGTCGCTTCCTCGTCGGCTCTCAATGGCGCCTTCAAGTGCTCCGACGTCGACTCATCGCCGATTTTGATTTTCCTGTTCTTTCACAAAGCGATGCGGAATGAGCTTGACGCGTTGCACCGGTTAGCTATGGCATTCGCCACCGGAAACCGCTCTGACATTCAGCCGCTCTCCGACCGCTACCATTTCCTCAGCGCGATTTATAGGCACCACTGCAATGCTGAAGATGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAACGTAGCACAGGCATATTCACTTGAGCACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTATTGAATTCTTCCATCCATAATGATGAAAGTTTTGCAAGAGAGTTAGCATCTTGCTCGGGAGCTTTGCAGACGTCAGTTAGTCAGCACATGGCAAAGGAAGAGGAGCAGGTATTTCCTCTACTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATCCTTAGTTTGGCAGTTCCTTTGCAGTATTCCTGTGAATATGATGGCAGAGTTTCTTCCATGGCTTTCAACATCTATTCCACCTGATGAATCTCAGGATTTACAAAATTGCTTGATCAAGATAGTGCCAGAGGAAAAGCTTCTTCAGAAGGTAATTTTCACCTGGATGGAAGGGAGAAGTTGTATCAACAAACTTGAAAGTTGTAAAGATCATTCTCAAGTTAAATGTGGTTCTAGCCCATTAGCCCATCAAGTTGGGAAAGTAAGCTGCATATGTGAATCCACAACAACTGGAAAAAGGAAGTATTCTGAATCTATGCTAGATGTTTCTGATGTCAGTGGAACACATCCTATAGATGAAATAGTGCTCTGGCATAATGCAATTAAAAAAGAGTTAAGTGAGATAGCAGAGGAGACTAGAAAGATACAACAATTGGGAGATTTTACTAATATATCAGCTTTTAATGAAAGATTGCAATTCGTTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATATTTCCAGCTGTAGATGGAGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGAGTTTGATTGAAGGTATTCAAAATGAAGGAGCATCATCTAATTCAGAAGTTGAATTTTATTCCAAGCTATGTTCACACGCTGACCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAATGTGAACTTCTTTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAAAAGAAGCAAAGATTTTCCTGAACAACATGCAACTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGCTCGTAATGAAGGTCTGTGTTTATCATCAAGCTCATTGGGTTGTTGTCCATCTCAAAGAATTTCTGATATTGAAGAAAACACTGGCCGGCCATCCTGTGTCTGTGACTCTGCATCATCTGGGAGACAGTGCTCAGTACTAGCTGAGTTAGATGGGAGCGAAAGATCAGTCAAGAGAAACACATTGGAGCTGCAAAAGAATGGAGATGTACCTGAAACTTCAGAGTCTGATAATATCCAGAAACAATGTTGTAAAGCTCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCACTAACAATTTAGGGCTGAGTTCTGTTTCTACGGCCAAGTCCTTACGCTCATTGTCTTTTAGCTCTTCTCCCCCATCTCTTAATTCCAGTCTTTTCATATGGGAAACAGAGAGCAGCTCCGGTGATGTTGGCTCTACACAAAGACCAATCGATACTGTGTTTAAATTCCATAAAGCTATACGGAAAGACTTGGAGTATCTAGATGTCGAATCTGGAAAACTGAGTCATGGTGATGAAACCATTCTTCGGCACTTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGACATAGTATTTCCAGCACTGGAATCCAAAGAGGCACTTCATAATGTGAGTCATTCATACATGCTAGACCATAAGCAGGAAGAACAACTGTTTGAAGATATTTCCTGCGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGCCTTGCAGATGACTCATATGTCAGAGGAATTAAGTGAAAGTAATTTTGGAACCTCTGATGCCAATGGAACTGATGATATCAAAAAGTTCAATGAACTTGCAACTAAGCTTCAGGGGATGTGCAAATCCGTAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCGTGAGCTCTGGCCATTGTTTGGGAGGCATTTCACTGTAGAAGAACAGGACAAAATAGTAGGACGAATAATTGGAACTACAGGTGCAGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACTCAGGAAGAACAAAACACGCTGATGGATACATGGAAGCAGGCGACTAAGAATACTATGTTCAGTGAATGGCTTAATGAATGCTGGAAAGAGAGTCAGGCATCTGTAGTACAGACAGAAACATCTGATTATAGCACTTCTCAAAGAGGTTCTGAGAATCAAGAAAGCTTAGATCACACTGATCAAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAAGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTAATGACAAGTCGTTGGATAGCTGCCCAGCAAAAATCACCTAAAGCTCCATCTGAAGGATCATCTGGTGTAGAAATAGAAGGATATTCACCATCCTTTCGGGACCCAGGGAAACATGTATTTGGGTGTGAACACTATAAGAGAAATTGCAAGCTCCGAGCTGCATGTTGTGGCAAGTTATTTACATGTAGGTTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCCGTAGGACCTATATGCATGACACCTTCATGTAATGGACTTTCAATGGCAAAATATTTCTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTCGGACGAGGGCTTGGGATTGATTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGTATTAAATCAACATCTCACAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGCGACGACTTATTCACATCAAGTGCTCCAGTCAGAGCTCTACCTTGTGGCCACTATATGCATTCTGCTTGCTTTCAGGCATACACCTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTATAGGGACCGCAATCAGGACATACTCTGCCATGACTGTAACCGAAAGGGAACCTCACGTTTCCATTGGTTGTATCACAAATGTGGATTTTGTGGCTCTTACAATACTCGGGTAATCAAGTCAGAGACCTATTCCAGCTGCTCTTAG 3711 0.4198 MATPLDGGGGVTVLSNSVNNVASSSALNGAFKCSDVDSSPILIFLFFHKAMRNELDALHRLAMAFATGNRSDIQPLSDRYHFLSAIYRHHCNAEDEVIFPALDIRVKNVAQAYSLEHKGESNLFDHLFELLNSSIHNDESFARELASCSGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSIPPDESQDLQNCLIKIVPEEKLLQKVIFTWMEGRSCINKLESCKDHSQVKCGSSPLAHQVGKVSCICESTTTGKRKYSESMLDVSDVSGTHPIDEIVLWHNAIKKELSEIAEETRKIQQLGDFTNISAFNERLQFVAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRSLIEGIQNEGASSNSEVEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQCELLYQSLCMMPLKLIERVLPWLVGSLTEKEAKIFLNNMQLAAPATDSALVTLFCGWACKARNEGLCLSSSSLGCCPSQRISDIEENTGRPSCVCDSASSGRQCSVLAELDGSERSVKRNTLELQKNGDVPETSESDNIQKQCCKARSCCVPGLGVSTNNLGLSSVSTAKSLRSLSFSSSPPSLNSSLFIWETESSSGDVGSTQRPIDTVFKFHKAIRKDLEYLDVESGKLSHGDETILRHFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSELSVLHEALQMTHMSEELSESNFGTSDANGTDDIKKFNELATKLQGMCKSVRVTLDQHIFREERELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTLMDTWKQATKNTMFSEWLNECWKESQASVVQTETSDYSTSQRGSENQESLDHTDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKSPKAPSEGSSGVEIEGYSPSFRDPGKHVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPVGPICMTPSCNGLSMAKYFCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICCDDLFTSSAPVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRNQDILCHDCNRKGTSRFHWLYHKCGFCGSYNTRVIKSETYSSCS* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0134 1236 CDD Hr-like 653 808 - -
Lja4g0134 1236 SMART ring_2 1121 1162 IPR001841 -
Lja4g0134 1236 CDD RING-H2_Pirh2 1120 1163 - -
Lja4g0134 1236 PANTHER CHY ZINC FINGER PROTEIN 28 1235 - -
Lja4g0134 1236 CDD Hr-like 43 169 - -
Lja4g0134 1236 Pfam Hemerythrin HHE cation binding domain 297 431 IPR012312 -
Lja4g0134 1236 Pfam Hemerythrin HHE cation binding domain 45 171 IPR012312 -
Lja4g0134 1236 Pfam Hemerythrin HHE cation binding domain 646 809 IPR012312 -
Lja4g0134 1236 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Lja4g0134 1236 SUPERFAMILY CHY zinc finger-like 987 1048 IPR037274 GO:0008270
Lja4g0134 1236 Gene3D nmb1532 protein domain like 300 447 - -
Lja4g0134 1236 Gene3D nmb1532 protein domain like 39 189 - -
Lja4g0134 1236 Pfam Ring finger domain 1120 1162 IPR001841 -
Lja4g0134 1236 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Lja4g0134 1236 Gene3D - 1191 1233 - -
Lja4g0134 1236 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Lja4g0134 1236 SUPERFAMILY RING/U-box 1118 1173 - -
Lja4g0134 1236 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 28 1235 - -
Lja4g0134 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1117 1165 IPR013083 -
Lja4g0134 1236 Gene3D nmb1532 protein domain like 642 882 - -
Lja4g0134 1236 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Lja4g0134 1236 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Lja4g0134 1236 CDD Hr-like 300 429 - -
Lja4g0134 1236 SUPERFAMILY Zinc hairpin stack 1058 1114 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0134 Lja-Chr4 1016807 1031389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0134 1 1231 C2H2 Transcription Factor Family AT3G18290 66.080 0.0 1675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0134 K16276 - gmx:100801725 2201.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0134 4 1016807 1031389 Lja2g2110 2 23352543 23363122 PCT