Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0133 ATGAACGGACTAGGTCTGGATGAAAATTATTCAACAAATCTTGAATGGTTTAGAAAAGGTAAGCCCTCACGAGTTTCCCATGAACTTTGTTGGTTAGATCTGGGTAGTTGTGAATCCCTTACAATGCTTCCAATTGACCTTTGTAAGTTGAAATTGCTAAGAAGACTCGATCTGAGTGGTTGCTCAAATTTGGAAAAATTCCCTGAAATTGTGGACACAATGGAAAATTTAGCTGTGCTTGTCTTAGACCAAACAGCAATACAAGAACTACCTTCATCCTTGGACCGTTTGGTGGGACTTGAAGAACTGAGCTTGCACAAATGTCGAAGGCTTGAGATTATACCCTCTTCGATTGGAAGACTAACCAAACTCTGCAAGTTAAACCTTACCTGCTGTGTATCACTTGAAACTTTTCCAAGCAGCATTTTCAAATTGAAGTTGACAGAACTTGATTTGTTTTGTTGCTCAAAGCTAAAGACCTTACCAAAGATCTTGGAGCCGGCAGAAAGCTTTGCTCACATTAACTTATCATATACATCAATTAAAGAACTTCCTTCATCATTGGATTTTTTGGTGGGTCTTCAAACCCTTTGTCTGGAAGAGTGTCGTAATCTGGAGTCACTTCCAAACATCATTGGTAATCTAAACATTCTCTCTGATCTTGACTGTACTAGCTGTTCTAATTTAACAGAAATCCCAAATGACATAGGTCGCTTGTTATCATTAAGGAAATTGTCACTATGTTATACCAGAATGGTGAATCTTCCGGAGAGTATTGCTCAACTTTCAAGCTTGGAATCACTTGATGTAAGAGATTGCAGAGAGCTTGAATGTATTCCACAACATCCACCATTTCTGATAATGTTATTGGCATTTCGTTGCCCATCCATTAGGAGAGTGGTGCCAAATTCAAGGGTTAAACCCTGGTCAGGTTCTAGAGAGGGTAGTGATGAACTAGATCCAAGTGCTTATAGTGATGTTGTGGCCGATGCCAGGGTTAGGATCATTGAGGATGCATATAGGTTTGTGTACTATTGCTTTCCAGGGAGTGAAGTTCCTGATTGGTTCCCTTATAGTTGCGAGGGAAATTCAGTAACCATGGATCAAGATTTTCAATATTGGTGCAATGATAATAGGCTCATTGGTTTTGCTATGTGTGTCGTTTTGCCAGTTGAAGATGTAAACTGCATATGTTATCTTAATGGTGACTTAAGATGCAGATTAACATTTGAATCTGATGGCAACACACACATCCTTCCCAACAATGTTCATCTACACAACTCTTTCTATCGGTGTTCTCATAGAATGTATAATGACATGCCAGATCACACATTCATAGGGAAATATTACTTCAGGGACTCTGCAGGCGTCGACATAGGGATCTCTTATGGCCTCCACTTCACTTTTGGAATCAGCCTTCCGTGGCTAGATTTTGAATCAAGCCTCGAGGTGAAAGAGTGCGGAATATGGCCTCTTTATCAAAGAACAAGGCATTTTTCGAATAAGCCAATTCATTTGGGACCCCACAGATCCACTTATACCAAAGAAAGAGATGATATTGGCAGCATAGTTGATTCTTCTAGCTTTCCAAGAGTTTCAAATAATGACTTTGAAGAACGTAAAGGGAAGAGGAAGTGTCTAGGGTGA 1647 0.3977 MNGLGLDENYSTNLEWFRKGKPSRVSHELCWLDLGSCESLTMLPIDLCKLKLLRRLDLSGCSNLEKFPEIVDTMENLAVLVLDQTAIQELPSSLDRLVGLEELSLHKCRRLEIIPSSIGRLTKLCKLNLTCCVSLETFPSSIFKLKLTELDLFCCSKLKTLPKILEPAESFAHINLSYTSIKELPSSLDFLVGLQTLCLEECRNLESLPNIIGNLNILSDLDCTSCSNLTEIPNDIGRLLSLRKLSLCYTRMVNLPESIAQLSSLESLDVRDCRELECIPQHPPFLIMLLAFRCPSIRRVVPNSRVKPWSGSREGSDELDPSAYSDVVADARVRIIEDAYRFVYYCFPGSEVPDWFPYSCEGNSVTMDQDFQYWCNDNRLIGFAMCVVLPVEDVNCICYLNGDLRCRLTFESDGNTHILPNNVHLHNSFYRCSHRMYNDMPDHTFIGKYYFRDSAGVDIGISYGLHFTFGISLPWLDFESSLEVKECGIWPLYQRTRHFSNKPIHLGPHRSTYTKERDDIGSIVDSSSFPRVSNNDFEERKGKRKCLG* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0133 548 PANTHER TMV RESISTANCE PROTEIN N-LIKE 114 215 - -
Lja4g0133 548 PANTHER TMV RESISTANCE PROTEIN N-LIKE 28 121 - -
Lja4g0133 548 PANTHER TMV RESISTANCE PROTEIN N-LIKE 174 281 - -
Lja4g0133 548 Pfam C-JID domain 347 495 IPR045344 -
Lja4g0133 548 PANTHER LEUCINE-RICH REPEAT-CONTAINING 174 281 - -
Lja4g0133 548 Gene3D Ribonuclease Inhibitor 147 294 IPR032675 -
Lja4g0133 548 SUPERFAMILY L domain-like 28 288 - -
Lja4g0133 548 Gene3D Ribonuclease Inhibitor 4 146 IPR032675 -
Lja4g0133 548 PANTHER LEUCINE-RICH REPEAT-CONTAINING 114 215 - -
Lja4g0133 548 PANTHER LEUCINE-RICH REPEAT-CONTAINING 28 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0133 Lja-Chr4 1011006 1013138 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0133 94 283 WRKY Transcription Factor Family AT4G12020 35.263 2.74e-17 84.0