Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0132 ATGTCTGCGAGCTCTTCTTCTTCTTCTGCTGCTGCTGCTGTTATGGCTCCTCCTTCTCCTCCACCAAAGTATGATGTGTTTGTGAGCTTTAGAGGGGAAGATACGCGTGACAACTTCACTAGTCATTTCTATGCTGAACTTAGCAGAAAAAATATCCAAGCCTTCATAGATAATAGACTAGGCAGAGGTGATGAGATCTCACCAGCACTCCACACAGCAATTGAAGATTCCATGATTTATGTCATCGTTTTCTCGGAACACTATGCTTCTTCCTCGTGGTGTTTGGATGAACTTGCCAGGATACTCGAGTGCAGGAAGAGATATGGAAGGGAGGTGATACCGGTTTTCTACAAGGTGAATCCATCAAGTGTTAGGCATCAGGAACAGAGTTATGCAGATGCTTTTGCTAAGCATGAACTGGGATTCAAGGATGAAGTCATTCGGAGGTGGAAGGCTGCTCTAGCAGAAGCAGCTGGAATTTCCGGCTGGGATTCAAACACCACCAGATCAAAATCCATGCTTATTGATCGTATTGTAGAAGATATTTTGAAAAAATTGAATCGTTCTGTCTCAAGTGAAACTCAAGGAATGGTTGGAATTGACAAGCATATTGCACAAATCCAGTCCTTGTTGCAGCTTCAGTCAGCAGCTGTTCGGATCATAGGAATTTGGGGCATGAGAGGAATAGGTAAAACTACACTGGTTGAGGCGTATCACAAACTGGGGACCCAATTCAGCTCTAGAAGCTTAACTGTGAATGCTCAACAAGAAATAGAAAGAGTTGGAACAAATGGTCTACGTCAAAAATACTTATCAGAGCTTTTAGATGAAGGAGGCAGCACGTCCAATGGATCAGGTTTTGCAGATGAAAGGCTCAAACAGGCAAAGGTTCTCCTTATTCTTGATGACGTGAAAAACTCGAGTCAAATTCAGGAATTAATTCGAGGACGTGGATACTTCAGTCAGGGAAGTAGAATCATTGTGACTAGCAGAGACAGGCAGGTGCTTCACAATGCTAGAGTTGATGAAATATATGAAGTCAAGGAGATGAGTTACAAAGATTCTCTACAACTATTTAGTTTACATGCCTTTAAACAAAAAAGTCCGGTGGGAGTTAATGCAGATTTGGCAGATAAGGTATTAGAATATGCTAAAGGTATCCCAATAGCTCTCAAAGTTTTAGGCTCACTGCTATATGGTAGAACAAGGAAAGTATGGGAAAGTCATTTGGAAAAGCTTCCCGATGACCAAATTTTCAGTGTGTTGAAATTAAGTTATGATGGGCTGGATGATGAACATAAGGACATATTTCTTGATATAGCTTGCTTCTATAGAGGACATTCGATGAATGTAGCAGTGGATTTGCTAGATGGTTGTGGTTTCTCTGCTGACATTGGAATTGATGTTCTCAAAGATAGGGGCCTCATATATATTTTGGAAGATCAAATCAGGCTGCATGATCTAATATGGGATATGGGAAAACAAATTGTTCGCCAACAATGTCTCAATGATCCTGGAAAACGCAGTCGTTTATGGAAACATAAAGAAGTTTATGATGTTTTAAGAAAGAACCAGGTATGTTATTCTGCACCTCAAGCCCCACTTGATAACGCTCATGGATTTACTCCTCTCAGACTACAAAGGACTGAGCAGTTACTAATTTTCCTATAA 1671 0.4081 MSASSSSSSAAAAVMAPPSPPPKYDVFVSFRGEDTRDNFTSHFYAELSRKNIQAFIDNRLGRGDEISPALHTAIEDSMIYVIVFSEHYASSSWCLDELARILECRKRYGREVIPVFYKVNPSSVRHQEQSYADAFAKHELGFKDEVIRRWKAALAEAAGISGWDSNTTRSKSMLIDRIVEDILKKLNRSVSSETQGMVGIDKHIAQIQSLLQLQSAAVRIIGIWGMRGIGKTTLVEAYHKLGTQFSSRSLTVNAQQEIERVGTNGLRQKYLSELLDEGGSTSNGSGFADERLKQAKVLLILDDVKNSSQIQELIRGRGYFSQGSRIIVTSRDRQVLHNARVDEIYEVKEMSYKDSLQLFSLHAFKQKSPVGVNADLADKVLEYAKGIPIALKVLGSLLYGRTRKVWESHLEKLPDDQIFSVLKLSYDGLDDEHKDIFLDIACFYRGHSMNVAVDLLDGCGFSADIGIDVLKDRGLIYILEDQIRLHDLIWDMGKQIVRQQCLNDPGKRSRLWKHKEVYDVLRKNQVCYSAPQAPLDNAHGFTPLRLQRTEQLLIFL* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0132 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 440 IPR027417 -
Lja4g0132 556 Gene3D - 185 345 IPR027417 -
Lja4g0132 556 SMART till_3 23 160 IPR000157 GO:0007165
Lja4g0132 556 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 534 - -
Lja4g0132 556 PRINTS Disease resistance protein signature 291 305 - -
Lja4g0132 556 PRINTS Disease resistance protein signature 220 235 - -
Lja4g0132 556 PRINTS Disease resistance protein signature 384 398 - -
Lja4g0132 556 Pfam TIR domain 23 198 IPR000157 GO:0007165
Lja4g0132 556 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 534 IPR044974 GO:0006952
Lja4g0132 556 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 163 IPR035897 -
Lja4g0132 556 SUPERFAMILY "Winged helix" DNA-binding domain 416 521 IPR036390 -
Lja4g0132 556 Gene3D - 349 430 IPR042197 -
Lja4g0132 556 ProSiteProfiles TIR domain profile. 22 186 IPR000157 GO:0007165
Lja4g0132 556 Pfam NB-ARC domain 202 419 IPR002182 GO:0043531
Lja4g0132 556 Gene3D - 22 184 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0132 Lja-Chr4 1008262 1010833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0132 24 512 WRKY Transcription Factor Family AT4G12020 32.596 2.48e-66 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0132 - - lja:Lj4g3v3099550.1 1003.05