Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0129 ATGTTCAAGCTTGCATTTGCATGTTTTGTTTCTGCTTTGTTTCTCTGCTTTATCATTTCCTCTGGCAGCCACAACACTTCATCCTCAACAACATGCCCCGCTTACCGCTGCACAAATGGACCTAACATCAGTTACCCTTTCTGGCTAGCTAGAGGCTCCCCTCCTGATCAATATTGTGGATACCAAGAGCTTGGCCTTATCTGTTATGATGGTGACCCTATTTTCTCTCTACCTCCAGGATTGTACTACTATGTAAAAGATATAGACTATGAAAACCATAGTCTTAAACTGGTTGATGCTGACACCGCAAACCAAACATGTCCTAGGGCACTTCACAATGTTCCTGTGGGGAACCTTCCACTTTCTCACTCCCCCTTGAACAAAAATCTCAGCTTTTACTACAATTGCAGTGGTTACCCTTCTGGGGTGCCTTTCATTGAGTGTCTGAGTTCTGGGGTGAATAGGTCTTTTGTGTTTGAGATGGGGAATGAGACTAAGGGTTTTGACTGGGATGAGAATTGCCAAGTTAATGTTGTGGTGACTGTGATGAAGGATGAGGTTACAAGTGATGGGTTGATGAGTGAGTTTGCTGGGGCCATGAATGAAGGGTTTGTGCTTGATTGGCAAACACCTGCAAGTTGTGCTGAGTGTGAGGCCAGTGATGGAGTTTGTGGCTATAGTAACACCAAGAAGGAGTTGCTCTGCTTTTGCAAGGATGGCAGTACAACAAGCAATAACTGTCAAGGAGGGAGTAGCAGCAGTTCATCAAGACTAATTATCGGTTCAATAGCTGGAGGAATTGGAGCACTGTTGATATGCATCACAATTTGCATTTTTAGACGAAAATTATCACCAATTGTGTCAAAACATTGGAAGGCCAAAAAGGTTGATCAAGATATTGAGGCCTTCATCAGAAACAATGGGCCTCAAGCCATAAAAAGATACTCTTACTCAGAGATCAAGAAAGTGACAAATTCTTTCAAATCCAAACTGGGACAAGGTGGTTATGGTCAGGTATATAAAGGGAACCTAAACAACAATTGTCCTGTGGCTGTGAAGGTACTGAATGCTTCCAAAGGGAATGGTCAAGAATTTCTCAATGAGGTTGTGAGCATAGGTAGAACATCCCATGTAAATGTTGTTAACCTCCTTGGTTTTTGCCTTGAAGGCCAGAAGAAAGCTCTGATATATGAGTTTATGCCTAATGGATCACTTGAAAAGTTTACACACAAGAAGAACTTTGAAACCAATTTGAGTTGGGAAAGGTTACACAAGATTGCAGAAGGGATAGCTAAAGGACTAGAGTACTTGCATAAGGGTTGCAACACGAGGATTTTACACTTCGACATAAAGCCAAGCAACATCCTTTTGGACAAAAATTTCTGCCCCAAAATCGCGGATTTCGGGCTGGCGAAGCTATGCTCAGAAACACACAGTATCATATCTATGCATGATGCTAGAGGGACTATAGGGTACATCGCACCAGAAGTGTGGAACAGAAACTTTGGAGGAGTGTCACATAAGTCTGATGTGTATAGTTATGGTATGCTGATTTTGGAGATAGTTGGAGCCAAGCAAAACATTAGAAATGAAGCAAGTGATTCCAGTGAGACATATTTTCCTCATTGGATATACAAGCATATTGAGGTGGAGAGCAATTTGGCATGGCATGATGGTATGAGCATTGAGGAAAATGAAATTTGTAAGAAAATGGTTATAGTAGGACTGTGGTGCATACAAACAATCCCATCTAATAGGCCACCAATGAGTAAGGTGGTTGAAATGTTGGAAGGAAGCATAGAACAGTTGCAAATTCCACCAAAGCCATTCATGTTTTCTCCTACAAAAACTGAAGTGGAATCTGGCACTACTAGTAACTCTGATTAA 1887 0.4165 MFKLAFACFVSALFLCFIISSGSHNTSSSTTCPAYRCTNGPNISYPFWLARGSPPDQYCGYQELGLICYDGDPIFSLPPGLYYYVKDIDYENHSLKLVDADTANQTCPRALHNVPVGNLPLSHSPLNKNLSFYYNCSGYPSGVPFIECLSSGVNRSFVFEMGNETKGFDWDENCQVNVVVTVMKDEVTSDGLMSEFAGAMNEGFVLDWQTPASCAECEASDGVCGYSNTKKELLCFCKDGSTTSNNCQGGSSSSSSRLIIGSIAGGIGALLICITICIFRRKLSPIVSKHWKAKKVDQDIEAFIRNNGPQAIKRYSYSEIKKVTNSFKSKLGQGGYGQVYKGNLNNNCPVAVKVLNASKGNGQEFLNEVVSIGRTSHVNVVNLLGFCLEGQKKALIYEFMPNGSLEKFTHKKNFETNLSWERLHKIAEGIAKGLEYLHKGCNTRILHFDIKPSNILLDKNFCPKIADFGLAKLCSETHSIISMHDARGTIGYIAPEVWNRNFGGVSHKSDVYSYGMLILEIVGAKQNIRNEASDSSETYFPHWIYKHIEVESNLAWHDGMSIEENEICKKMVIVGLWCIQTIPSNRPPMSKVVEMLEGSIEQLQIPPKPFMFSPTKTEVESGTTSNSD* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0129 628 Pfam Wall-associated receptor kinase galacturonan-binding 32 99 IPR025287 GO:0030247
Lja4g0129 628 Gene3D Transferase(Phosphotransferase) domain 1 400 610 - -
Lja4g0129 628 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Lja4g0129 628 Pfam Protein tyrosine and serine/threonine kinase 327 596 IPR001245 GO:0004672|GO:0006468
Lja4g0129 628 PANTHER RUST RESISTANCE KINASE LR10-RELATED 20 626 IPR045874 GO:0004672
Lja4g0129 628 PANTHER - 20 626 - -
Lja4g0129 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Lja4g0129 628 ProSiteProfiles Protein kinase domain profile. 325 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0129 628 Gene3D Phosphorylase Kinase; domain 1 299 399 - -
Lja4g0129 628 SUPERFAMILY Protein kinase-like (PK-like) 308 597 IPR011009 -
Lja4g0129 628 Pfam Wall-associated receptor kinase C-terminal 152 240 IPR032872 -
Lja4g0129 628 SMART serkin_6 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0129 Lja-Chr4 992556 995426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0129 33 609 Receptor kinase-like Gene Family AT5G38260 40.735 5.64e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja4g0129 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0129 - - gmx:100781977 946.421